GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001109-TA|BGIBMGA001109-PA|undefined
         (66 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC130373-1|AAI30374.1|  633|Homo sapiens ClpX caseinolytic pepti...    31   0.44 
AJ276980-1|CAC01291.1|  633|Homo sapiens ClpX protein protein.         31   0.44 
AJ006267-1|CAA06933.2|  633|Homo sapiens ClpX-like protein protein.    31   0.44 

>BC130373-1|AAI30374.1|  633|Homo sapiens ClpX caseinolytic
           peptidase X homolog (E. coli) protein.
          Length = 633

 Score = 31.5 bits (68), Expect = 0.44
 Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 2/46 (4%)

Query: 5   GLEHHMLKVIHLRYLITVPETNFRLIQNKTDD-DTVNVICAAEGAF 49
           G++  +LK++    ++ VPE N R ++ +T   DT N++  A GAF
Sbjct: 379 GVQQGLLKLLE-GTIVNVPEKNSRKLRGETVQVDTTNILFVASGAF 423


>AJ276980-1|CAC01291.1|  633|Homo sapiens ClpX protein protein.
          Length = 633

 Score = 31.5 bits (68), Expect = 0.44
 Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 2/46 (4%)

Query: 5   GLEHHMLKVIHLRYLITVPETNFRLIQNKTDD-DTVNVICAAEGAF 49
           G++  +LK++    ++ VPE N R ++ +T   DT N++  A GAF
Sbjct: 379 GVQQGLLKLLE-GTIVNVPEKNSRKLRGETVQVDTTNILFVASGAF 423


>AJ006267-1|CAA06933.2|  633|Homo sapiens ClpX-like protein protein.
          Length = 633

 Score = 31.5 bits (68), Expect = 0.44
 Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 2/46 (4%)

Query: 5   GLEHHMLKVIHLRYLITVPETNFRLIQNKTDD-DTVNVICAAEGAF 49
           G++  +LK++    ++ VPE N R ++ +T   DT N++  A GAF
Sbjct: 379 GVQQGLLKLLE-GTIVNVPEKNSRKLRGETVQVDTTNILFVASGAF 423


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.322    0.138    0.426 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,002,482
Number of Sequences: 224733
Number of extensions: 361246
Number of successful extensions: 675
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 675
Number of HSP's gapped (non-prelim): 3
length of query: 66
length of database: 73,234,838
effective HSP length: 45
effective length of query: 21
effective length of database: 63,121,853
effective search space: 1325558913
effective search space used: 1325558913
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 57 (27.1 bits)