GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001109-TA|BGIBMGA001109-PA|undefined
         (66 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g67160.1 68418.m08466 transferase family protein similar to a...    27   1.2  
At3g13980.1 68416.m01765 expressed protein                             26   3.6  
At3g04450.1 68416.m00472 myb family transcription factor contain...    25   4.7  
At5g38220.2 68418.m04607 expressed protein                             25   6.2  
At1g58300.1 68414.m06632 heme oxygenase, putative similar to hem...    25   6.2  

>At5g67160.1 68418.m08466 transferase family protein similar to
          anthranilate N-hydroxycinnamoyl/benzoyltransferase,
          Dianthus caryophyllus [gi:2239091]; contains Pfam
          transferase family domain PF002458
          Length = 434

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 5/49 (10%)

Query: 5  GLEHHMLKVIHLRYLITVPETNF-----RLIQNKTDDDTVNVICAAEGA 48
          GL  H ++V  L+  ++V    F     RL++ K DDDTV+   + +G+
Sbjct: 45 GLLFHKIEVKQLQASLSVALDRFYPLAGRLVKLKNDDDTVSFFISCDGS 93


>At3g13980.1 68416.m01765 expressed protein
          Length = 357

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 4/53 (7%)

Query: 10  MLKVIHLRYLITVPETNFRLIQNKTDDDTVNVICAAEGAFPAPNLTLATPERY 62
           +L+  H +  +T   TN   ++   +DD  +  CA+   F   NL+    ERY
Sbjct: 284 LLRTYHNKNKVTT--TNINNVEEDDEDDAAS--CASSDLFELENLSAIGIERY 332


>At3g04450.1 68416.m00472 myb family transcription factor contains
           Pfam profile: PF00249 myb-like DNA-binding domain
          Length = 438

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 12/39 (30%), Positives = 23/39 (58%)

Query: 17  RYLITVPETNFRLIQNKTDDDTVNVICAAEGAFPAPNLT 55
           RYL  + E   ++ +NK D  + + +  A+ + P+PNL+
Sbjct: 357 RYLQMMIEKQQKMQENKKDSTSSSSMPEADPSAPSPNLS 395


>At5g38220.2 68418.m04607 expressed protein
          Length = 238

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 10/22 (45%), Positives = 15/22 (68%)

Query: 13  VIHLRYLITVPETNFRLIQNKT 34
           VIH+++LI + E NF   Q K+
Sbjct: 204 VIHMKWLIVLMENNFGNFQKKS 225


>At1g58300.1 68414.m06632 heme oxygenase, putative similar to heme
          oxygenase 4 GI:14485565 from [Arabidopsis thaliana]
          Length = 283

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 12 KVIHLRYLITVPETNFRLIQNKTDDDT--VNVICAA 45
          K + +RY+ T+      L++   +D T  VNV+ AA
Sbjct: 29 KTVTIRYVRTIAAPRRHLVRRANEDQTLVVNVVAAA 64


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.322    0.138    0.426 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,751,491
Number of Sequences: 28952
Number of extensions: 56846
Number of successful extensions: 81
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 78
Number of HSP's gapped (non-prelim): 5
length of query: 66
length of database: 12,070,560
effective HSP length: 46
effective length of query: 20
effective length of database: 10,738,768
effective search space: 214775360
effective search space used: 214775360
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 51 (24.6 bits)