GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001108-TA|BGIBMGA001108-PA|IPR013151|Immunoglobulin,
IPR007110|Immunoglobulin-like
         (149 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B1.02c |||NAD/NADH kinase |Schizosaccharomyces pombe|chr 1|...    26   2.1  
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    26   2.8  
SPAC1093.03 |||inositol polyphosphate phosphatase |Schizosacchar...    25   4.8  

>SPAC1B1.02c |||NAD/NADH kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 537

 Score = 26.2 bits (55), Expect = 2.1
 Identities = 9/28 (32%), Positives = 16/28 (57%)

Query: 49  ILDCDYTYGNNTSGLMVKWFFKNNARPV 76
           + DC  T G++++ L   W F++   PV
Sbjct: 278 LFDCVITVGDDSAALRASWLFQDVVPPV 305


>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 486

 Score = 25.8 bits (54), Expect = 2.8
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 3/51 (5%)

Query: 56  YGNNTSGLMVKWF--FKNNARPVY-QWIVPQKPQDMGILRGRVDLTYRASN 103
           YGN ++  +V+    F  NAR  Y  W+VP     M   +   DL+Y+ +N
Sbjct: 389 YGNLSNEELVERIDAFYMNARRTYVHWVVPLIDIKMEARQSIADLSYKITN 439


>SPAC1093.03 |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 8/17 (47%), Positives = 12/17 (70%)

Query: 64  MVKWFFKNNARPVYQWI 80
           + KW F N  RPV+++I
Sbjct: 699 LYKWLFNNEERPVHKFI 715


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.323    0.138    0.434 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 709,761
Number of Sequences: 5004
Number of extensions: 27340
Number of successful extensions: 37
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 34
Number of HSP's gapped (non-prelim): 3
length of query: 149
length of database: 2,362,478
effective HSP length: 67
effective length of query: 82
effective length of database: 2,027,210
effective search space: 166231220
effective search space used: 166231220
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 50 (24.2 bits)