GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001108-TA|BGIBMGA001108-PA|IPR013151|Immunoglobulin,
IPR007110|Immunoglobulin-like
         (149 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0266 - 16582912-16584918,16585041-16585229                       27   8.3  
09_04_0197 - 15522167-15523524,15525416-15525683                       27   8.3  
02_02_0188 + 7617838-7620231,7621856-7622071,7622167-7622328,762...    27   8.3  

>12_02_0266 - 16582912-16584918,16585041-16585229
          Length = 731

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 18/56 (32%), Positives = 27/56 (48%)

Query: 38  EIIQYGVQDAVILDCDYTYGNNTSGLMVKWFFKNNARPVYQWIVPQKPQDMGILRG 93
           EII   V  +V+ +   TYG++TS L +K       R ++  +  Q  QD   L G
Sbjct: 630 EIIIDSVSFSVLKELKLTYGSSTSSLSIKPGAMPKLRIMHLIVFGQAEQDTKSLYG 685


>09_04_0197 - 15522167-15523524,15525416-15525683
          Length = 541

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 14/42 (33%), Positives = 23/42 (54%)

Query: 42  YGVQDAVILDCDYTYGNNTSGLMVKWFFKNNARPVYQWIVPQ 83
           YG ++ V +  D  YG +    +++    N+AR  YQ I+PQ
Sbjct: 164 YGWREVVPIYIDTDYGRSIIPDLLEALQGNDARVPYQSIIPQ 205


>02_02_0188 +
           7617838-7620231,7621856-7622071,7622167-7622328,
           7622466-7622516,7622936-7623070,7623161-7623184,
           7623341-7623452,7623776-7623901,7624004-7624053,
           7624339-7624497,7624582-7624677,7624751-7624866,
           7624907-7624984,7624985-7625108,7625193-7625306,
           7625423-7625503,7625616-7625756,7625834-7625848
          Length = 1397

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 10/29 (34%), Positives = 14/29 (48%)

Query: 56  YGNNTSGLMVKWFFKNNARPVYQWIVPQK 84
           Y + T+G + KW F+ N R    W    K
Sbjct: 603 YEHMTNGSLDKWIFRKNPRGTLSWATRYK 631


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.323    0.138    0.434 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,298,820
Number of Sequences: 37544
Number of extensions: 159762
Number of successful extensions: 216
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 213
Number of HSP's gapped (non-prelim): 3
length of query: 149
length of database: 14,793,348
effective HSP length: 76
effective length of query: 73
effective length of database: 11,940,004
effective search space: 871620292
effective search space used: 871620292
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 56 (26.6 bits)