GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001108-TA|BGIBMGA001108-PA|IPR013151|Immunoglobulin,
IPR007110|Immunoglobulin-like
         (149 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42485| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)                 28   3.7  
SB_50799| Best HMM Match : I-set (HMM E-Value=0)                       27   4.9  
SB_29852| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.4  
SB_19751| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.4  
SB_15780| Best HMM Match : Collagen (HMM E-Value=6e-06)                27   6.4  
SB_22614| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.5  

>SB_42485| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)
          Length = 1565

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 32/111 (28%), Positives = 45/111 (40%), Gaps = 12/111 (10%)

Query: 39  IIQYGVQDAVILDCDYTYGNNTSGLMVKWFFKNNARPVYQWIVPQKPQDMGILRGRVDLT 98
           II   V D+ +  CD        GL  K F  ++     + + P  P+  G+L   V   
Sbjct: 638 IINVTVNDSGMYVCDAV------GLKPKRFINDSVNINVKALAP--PKVSGLLNQTVKRE 689

Query: 99  YRASNDPLKMHRALRIVKPNT-DISGDYTCVVSTFMEEDSRTKQMTVFERV 148
            R S D   M   L I +PN    SG Y CV +  ++ D  T  + V   V
Sbjct: 690 -RVSED--SMGSPLIICEPNNRGYSGTYKCVATNKLDTDFATGSLNVLGNV 737


>SB_50799| Best HMM Match : I-set (HMM E-Value=0)
          Length = 1195

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 13/36 (36%), Positives = 18/36 (50%)

Query: 112  LRIVKPNTDISGDYTCVVSTFMEEDSRTKQMTVFER 147
            L+I K     +G Y CV      +D R+  +TV ER
Sbjct: 985  LKIWKAKRSDTGGYQCVAYIKQSKDERSTSVTVLER 1020


>SB_29852| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 836

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 12/28 (42%), Positives = 18/28 (64%)

Query: 122 SGDYTCVVSTFMEEDSRTKQMTVFERVA 149
           SG YTC VS  +   SRT ++ V +++A
Sbjct: 407 SGRYTCEVSNRLGSASRTGRLNVQDKIA 434


>SB_19751| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2644

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 9/27 (33%), Positives = 17/27 (62%)

Query: 40  IQYGVQDAVILDCDYTYGNNTSGLMVK 66
           + Y  +D ++  CD T GN+ +G++ K
Sbjct: 229 LPYSSRDVMVTTCDATKGNSGAGVLAK 255


>SB_15780| Best HMM Match : Collagen (HMM E-Value=6e-06)
          Length = 88

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 11/23 (47%), Positives = 15/23 (65%)

Query: 70 KNNARPVYQWIVPQKPQDMGILR 92
          K   R V+ W+V Q PQD+ +LR
Sbjct: 66 KTALRGVWAWLVLQVPQDLRVLR 88


>SB_22614| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 44

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 9/11 (81%), Positives = 11/11 (100%)

Query: 117 PNTDISGDYTC 127
           P+TDISG+YTC
Sbjct: 30  PSTDISGEYTC 40


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.323    0.138    0.434 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,235,545
Number of Sequences: 59808
Number of extensions: 196510
Number of successful extensions: 560
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 553
Number of HSP's gapped (non-prelim): 8
length of query: 149
length of database: 16,821,457
effective HSP length: 76
effective length of query: 73
effective length of database: 12,276,049
effective search space: 896151577
effective search space used: 896151577
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 56 (26.6 bits)