GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001108-TA|BGIBMGA001108-PA|IPR013151|Immunoglobulin,
IPR007110|Immunoglobulin-like
         (149 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032660-1|CAA21752.1|  711|Caenorhabditis elegans Hypothetical ...    30   0.60 
AF003142-2|AAB54190.1|  412|Caenorhabditis elegans Hypothetical ...    30   0.79 
U41992-2|AAV28347.2|  148|Caenorhabditis elegans Hypothetical pr...    27   5.6  
U58755-2|AAB00692.1|  362|Caenorhabditis elegans Hypothetical pr...    26   9.8  

>AL032660-1|CAA21752.1|  711|Caenorhabditis elegans Hypothetical
           protein Y70G10A.2 protein.
          Length = 711

 Score = 30.3 bits (65), Expect = 0.60
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 1/31 (3%)

Query: 77  YQWIVPQK-PQDMGILRGRVDLTYRASNDPL 106
           Y   VP K P+D+G L GR++L   A+ DPL
Sbjct: 605 YMNTVPHKDPRDIGKLNGRLELVTLAAEDPL 635


>AF003142-2|AAB54190.1|  412|Caenorhabditis elegans Hypothetical
           protein F57C9.7 protein.
          Length = 412

 Score = 29.9 bits (64), Expect = 0.79
 Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 3/60 (5%)

Query: 84  KPQDMGILRGRVDLTYRASNDPLKMHRALRIVKPNTDISGDYTCVVSTFMEEDSRTKQMT 143
           +PQ M   R R  L  R    P  + +  RI +P+ +++ DYTC   TF E+    K +T
Sbjct: 141 EPQAMPKQRRR-RLYRRKMTRPQGVPKRRRIKRPDLELADDYTC--DTFAEQGLTLKSLT 197


>U41992-2|AAV28347.2|  148|Caenorhabditis elegans Hypothetical
           protein F32E10.9 protein.
          Length = 148

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 15/63 (23%), Positives = 27/63 (42%)

Query: 72  NARPVYQWIVPQKPQDMGILRGRVDLTYRASNDPLKMHRALRIVKPNTDISGDYTCVVST 131
           ++R +++    + P    I+ GRV +   A+            +  NTD+SGD       
Sbjct: 12  SSRKIFESAAAKFPNCQAIITGRVIVEENANRGAEAEKLTRDFITKNTDVSGDELIKFIN 71

Query: 132 FME 134
           +ME
Sbjct: 72  YME 74


>U58755-2|AAB00692.1|  362|Caenorhabditis elegans Hypothetical
           protein C34D4.10 protein.
          Length = 362

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 14/34 (41%), Positives = 18/34 (52%)

Query: 79  WIVPQKPQDMGILRGRVDLTYRASNDPLKMHRAL 112
           W V  +  D+GI+R R D     S DPL  + AL
Sbjct: 210 WPVGVETCDIGIMRSRTDFKPLGSLDPLLDYPAL 243


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.323    0.138    0.434 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,803,219
Number of Sequences: 27539
Number of extensions: 146224
Number of successful extensions: 295
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 292
Number of HSP's gapped (non-prelim): 4
length of query: 149
length of database: 12,573,161
effective HSP length: 75
effective length of query: 74
effective length of database: 10,507,736
effective search space: 777572464
effective search space used: 777572464
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 55 (26.2 bits)