GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001108-TA|BGIBMGA001108-PA|IPR013151|Immunoglobulin,
IPR007110|Immunoglobulin-like
         (149 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   0.76 
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   1.0  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   1.7  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   4.0  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    21   7.1  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   7.1  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    20   9.3  

>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.8 bits (49), Expect = 0.76
 Identities = 11/33 (33%), Positives = 18/33 (54%)

Query: 112 LRIVKPNTDISGDYTCVVSTFMEEDSRTKQMTV 144
           L I   + D +G+Y+CV      E S T+++ V
Sbjct: 670 LMIEHLSPDHNGNYSCVARNLAAEVSHTQRLVV 702



 Score = 20.6 bits (41), Expect = 7.1
 Identities = 9/22 (40%), Positives = 10/22 (45%)

Query: 123  GDYTCVVSTFMEEDSRTKQMTV 144
            GDYTC V      D     +TV
Sbjct: 1376 GDYTCQVENAQGNDKLHYTLTV 1397


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 23.4 bits (48), Expect = 1.0
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 3/35 (8%)

Query: 90  ILRGRVDLTYRASNDPLKMHRALRIVKPNTDISGD 124
           +L GR D TYR   D   M   ++ + PNT++  D
Sbjct: 343 MLGGRTDTTYRVVCDACSM--GVKYI-PNTEVFND 374


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.6 bits (46), Expect = 1.7
 Identities = 12/33 (36%), Positives = 16/33 (48%)

Query: 112 LRIVKPNTDISGDYTCVVSTFMEEDSRTKQMTV 144
           L I     + SGDYTCV +    E   T ++ V
Sbjct: 674 LSITNLAAEHSGDYTCVAANPAAEVRYTAKLQV 706



 Score = 20.6 bits (41), Expect = 7.1
 Identities = 9/22 (40%), Positives = 10/22 (45%)

Query: 123  GDYTCVVSTFMEEDSRTKQMTV 144
            GDYTC V      D     +TV
Sbjct: 1380 GDYTCQVENAQGNDKLHYTLTV 1401


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 4.0
 Identities = 8/23 (34%), Positives = 13/23 (56%)

Query: 122  SGDYTCVVSTFMEEDSRTKQMTV 144
            +G+Y+C V      D+ T Q+ V
Sbjct: 1341 AGEYSCYVENTFGHDTVTHQLIV 1363


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 20.6 bits (41), Expect = 7.1
 Identities = 7/20 (35%), Positives = 10/20 (50%)

Query: 66  KWFFKNNARPVYQWIVPQKP 85
           KW   NN +    W  P++P
Sbjct: 155 KWVVYNNIKRKRSWSRPREP 174


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 20.6 bits (41), Expect = 7.1
 Identities = 9/23 (39%), Positives = 11/23 (47%)

Query: 55  TYGNNTSGLMVKWFFKNNARPVY 77
           T GN  S +     FKN   PV+
Sbjct: 536 TLGNQNSEMCFSLKFKNKKLPVF 558


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 20.2 bits (40), Expect = 9.3
 Identities = 10/31 (32%), Positives = 15/31 (48%)

Query: 94  RVDLTYRASNDPLKMHRALRIVKPNTDISGD 124
           R+ LT +   D L       I+ PN ++ GD
Sbjct: 333 RIQLTEKNGIDVLGNIMEASILSPNQNVYGD 363


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.323    0.138    0.434 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 44,520
Number of Sequences: 429
Number of extensions: 1934
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of query: 149
length of database: 140,377
effective HSP length: 53
effective length of query: 96
effective length of database: 117,640
effective search space: 11293440
effective search space used: 11293440
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 40 (20.2 bits)