GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001108-TA|BGIBMGA001108-PA|IPR013151|Immunoglobulin,
IPR007110|Immunoglobulin-like
         (149 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g14615.1 68417.m02249 expressed protein                             31   0.24 
At1g52825.1 68414.m05971 expressed protein                             31   0.43 
At5g62220.1 68418.m07813 exostosin family protein contains Pfam ...    29   1.3  
At5g01650.1 68418.m00081 macrophage migration inhibitory factor ...    27   7.0  

>At4g14615.1 68417.m02249 expressed protein
          Length = 76

 Score = 31.5 bits (68), Expect = 0.24
 Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 2/48 (4%)

Query: 38 EIIQYGVQDAVILDCDYTYGNNTSGLMVKWFFKNNARPVYQWIVPQKP 85
          EI+++GV  AV +   YT+ NN++   +K F  N +  VY    P+ P
Sbjct: 12 EIVKFGVYVAVPIVLMYTFANNSTN--IKKFMGNRSYVVYPEEAPRPP 57


>At1g52825.1 68414.m05971 expressed protein 
          Length = 78

 Score = 30.7 bits (66), Expect = 0.43
 Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 2/68 (2%)

Query: 38  EIIQYGVQDAVILDCDYTYGNNTSGLMVKWFFKNNARPVYQWIVPQKPQDMGILRGRVDL 97
           EI ++GV  AV +   YT+ NN++   +K F  N++  VY    P+ P    +      L
Sbjct: 12  EIAKFGVYVAVPIVLIYTFANNSTN--IKKFMGNHSYVVYPKEAPRPPSPEELREMAKQL 69

Query: 98  TYRASNDP 105
             +   +P
Sbjct: 70  ALKKKKNP 77


>At5g62220.1 68418.m07813 exostosin family protein contains Pfam
           profile: PF03016 Exostosin family
          Length = 517

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 11/38 (28%), Positives = 21/38 (55%)

Query: 61  SGLMVKWFFKNNARPVYQWIVPQKPQDMGILRGRVDLT 98
           +G +  +F++ +A   YQW +P KP    +   R ++T
Sbjct: 411 AGSIPVFFWRRSAYMQYQWFLPDKPDSYSVFIDRNEVT 448


>At5g01650.1 68418.m00081 macrophage migration inhibitory factor
           family protein / MIF family protein contains pfam
           profile: PF001187 Macrophage migration inhibitory factor
          Length = 115

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 2/53 (3%)

Query: 84  KPQD--MGILRGRVDLTYRASNDPLKMHRALRIVKPNTDISGDYTCVVSTFME 134
           KP++  M +L+G V +++  + DP      + I   N D++   +  VS  +E
Sbjct: 34  KPENYVMIVLKGSVPMSFGGTEDPAAYGELVSIGGLNADVNKKLSAAVSAILE 86


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.323    0.138    0.434 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,656,800
Number of Sequences: 28952
Number of extensions: 140159
Number of successful extensions: 235
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 234
Number of HSP's gapped (non-prelim): 4
length of query: 149
length of database: 12,070,560
effective HSP length: 75
effective length of query: 74
effective length of database: 9,899,160
effective search space: 732537840
effective search space used: 732537840
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 55 (26.2 bits)