Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001107-TA|BGIBMGA001107-PA|IPR002048|Calcium-binding
EF-hand
         (322 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    23   3.0  
AY337337-2|AAP94193.1|  491|Tribolium castaneum cytochrome P450 ...    23   4.0  
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           22   5.2  
EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B pro...    22   5.2  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          21   9.1  

>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 2/31 (6%)

Query: 148 NSEGF--TYSNLQKRDRRRWTYADADQNDAL 176
           N  GF  ++S L KR   +W Y   + ND L
Sbjct: 219 NWAGFADSHSPLYKRPHDQWAYEKLNVNDGL 249


>AY337337-2|AAP94193.1|  491|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 491

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 9/16 (56%), Positives = 11/16 (68%)

Query: 21  NEETKRLMDHLSDAEH 36
           NEETKRL++ L    H
Sbjct: 147 NEETKRLVEDLEAESH 162


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 6/9 (66%), Positives = 8/9 (88%)

Query: 111 HWRQQNPNN 119
           HWR+ NPN+
Sbjct: 387 HWRKNNPND 395


>EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B
           protein.
          Length = 279

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 9/34 (26%), Positives = 16/34 (47%)

Query: 64  SPEESKRRLGEIADKIDSDQDGFITLVELKDWIR 97
           +P  S  +LG++ D +    D    + E  DW +
Sbjct: 203 TPRRSGCKLGQVFDDVGKKCDWVRNVPECADWYK 236


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 8/21 (38%), Positives = 9/21 (42%)

Query: 112 WRQQNPNNEEFVTWEAYRKNV 132
           W   NPN  E   W    KN+
Sbjct: 663 WLNHNPNYAEVTDWYTGWKNM 683


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.317    0.134    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,064
Number of Sequences: 317
Number of extensions: 3484
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 5
length of query: 322
length of database: 114,650
effective HSP length: 57
effective length of query: 265
effective length of database: 96,581
effective search space: 25593965
effective search space used: 25593965
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 43 (21.4 bits)