Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001107-TA|BGIBMGA001107-PA|IPR002048|Calcium-binding
EF-hand
(322 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC830.06 |||calcineurin regulatory subunit |Schizosaccharomyce... 32 0.095
SPAC1D4.01 ||SPAC1F3.11|sequence orphan|Schizosaccharomyces pomb... 30 0.51
SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|ch... 29 0.89
SPBC839.10 |usp107|snu71|U1 snRNP-associated protein Usp107|Schi... 28 1.5
SPAC8C9.10c |||ribosome biogenesis protein Rrp14-N|Schizosacchar... 28 2.0
SPBC776.17 |||rRNA processing protein Rrp7 |Schizosaccharomyces ... 28 2.0
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 27 2.7
SPBC543.02c |||DNAJ/TPR domain protein DNAJC7 family|Schizosacch... 27 2.7
SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|c... 27 2.7
SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces p... 27 4.7
SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces pomb... 26 6.2
SPBP35G2.09 |usp103|yhc1|U1 snRNP-associated protein Usp103 |Sch... 26 6.2
SPBC32H8.08c |||mannosyltransferase complex subunit |Schizosacch... 26 8.3
SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces... 26 8.3
SPBC13G1.08c |ash2||Ash2-trithorax family protein|Schizosaccharo... 26 8.3
SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated heterochr... 26 8.3
SPBC1198.05 |||guanylate kinase |Schizosaccharomyces pombe|chr 2... 26 8.3
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc... 26 8.3
>SPCC830.06 |||calcineurin regulatory subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 174
Score = 32.3 bits (70), Expect = 0.095
Identities = 20/85 (23%), Positives = 45/85 (52%), Gaps = 4/85 (4%)
Query: 138 DMDEKELKAPNSEGFTYSNLQKRDRRRWTYADADQNDALNRTEFAAFLHPEDHSSMRD-- 195
D+D +E S + N +++ + + D D++ ++ E L +++R+
Sbjct: 72 DVDFQEFINSLSVFSVHGNKEEKLKFAFKIYDIDRDGYISNGELYLVLKMMVGTNLREDQ 131
Query: 196 --VVVLETLEDIDKDQDGKVSLDEY 218
+V +T+ ++DKD+DGK+S +E+
Sbjct: 132 LQQIVDKTIMEVDKDRDGKISFEEF 156
Score = 28.3 bits (60), Expect = 1.5
Identities = 34/154 (22%), Positives = 65/154 (42%), Gaps = 19/154 (12%)
Query: 153 TYSNLQ-KRDRRRWTYADADQNDALNRTEFAAFLHPEDHSSMRDVVVLETLEDIDKDQDG 211
++SN + +R R+R+ DA+Q+ +++R EF + S + + +D+D G
Sbjct: 17 SFSNEEIERIRKRFIKIDANQSGSIDRNEFLSI-----PSVASNPLASRLFSVVDEDGGG 71
Query: 212 KVSLDEYIGDMYKXXXXXXXXXXXWVKQEREQFT-GYRDTNKDGFMDEHE----VKDWIA 266
V E+I + K+E+ +F D ++DG++ E +K +
Sbjct: 72 DVDFQEFINSL-------SVFSVHGNKEEKLKFAFKIYDIDRDGYISNGELYLVLKMMVG 124
Query: 267 PP-EFDHAEAEARHLVFEADADADEKLTKAEIID 299
D + + E D D D K++ E D
Sbjct: 125 TNLREDQLQQIVDKTIMEVDKDRDGKISFEEFKD 158
>SPAC1D4.01 ||SPAC1F3.11|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 285
Score = 29.9 bits (64), Expect = 0.51
Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 6/54 (11%)
Query: 159 KRDRRRWTYADADQNDALNRTEFAAF------LHPEDHSSMRDVVVLETLEDID 206
K++R Y++ + +ALN + LHP +HS +RD L + ++D
Sbjct: 158 KQERLAQNYSENGETNALNTKNESTVQNIKNSLHPNEHSFIRDAAALGAIREVD 211
>SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 150
Score = 29.1 bits (62), Expect = 0.89
Identities = 14/49 (28%), Positives = 26/49 (53%)
Query: 169 DADQNDALNRTEFAAFLHPEDHSSMRDVVVLETLEDIDKDQDGKVSLDE 217
DAD N ++ TEF + + + + V E + DKD +G ++++E
Sbjct: 58 DADGNGTIDFTEFLTMMARKMKDTDNEEEVREAFKVFDKDGNGYITVEE 106
Score = 26.6 bits (56), Expect = 4.7
Identities = 13/69 (18%), Positives = 33/69 (47%)
Query: 62 QLSPEESKRRLGEIADKIDSDQDGFITLVELKDWIRYTQKRYIDEDVERHWRQQNPNNEE 121
++ +++ + E D D +G+IT+ EL + +R E+V R+ + + +
Sbjct: 77 KMKDTDNEEEVREAFKVFDKDGNGYITVEELTHVLTSLGERLSQEEVADMIREADTDGDG 136
Query: 122 FVTWEAYRK 130
+ +E + +
Sbjct: 137 VINYEEFSR 145
>SPBC839.10 |usp107|snu71|U1 snRNP-associated protein
Usp107|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 28.3 bits (60), Expect = 1.5
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Query: 163 RRWTYADADQNDALNRTEFAAFLHPEDHSSMRDVVVLETLEDIDKDQDGKVSLDEYIGD 221
RRW + + AL R E A +++ + E L D D++ +VS DEY D
Sbjct: 415 RRWMNREKARTAALER-EAAREEEERVNNTSFGTYLSEKLASFDDDEEARVSRDEYFVD 472
>SPAC8C9.10c |||ribosome biogenesis protein
Rrp14-N|Schizosaccharomyces pombe|chr 1|||Manual
Length = 154
Score = 27.9 bits (59), Expect = 2.0
Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 5/77 (6%)
Query: 74 EIADKIDSDQDGFITLVELKDWIRYTQKRYIDEDVERHWRQQNPNNEEFVTWEAYRKNVY 133
E+ ++I++ DGF EL +I K Y E W+Q+ EE + ++
Sbjct: 3 EVEERINAWNDGF---EELLSYI--PAKLYYREHTANQWKQKKSTLEEKKERRKMKFSLD 57
Query: 134 GFMDDMDEKELKAPNSE 150
G ++D D+ K+ E
Sbjct: 58 GLVNDADDDSQKSSKWE 74
>SPBC776.17 |||rRNA processing protein Rrp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 254
Score = 27.9 bits (59), Expect = 2.0
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Query: 40 EHHNKQFDHDAFLGEDQAKTFDQLSPEE--SKRRLGEIADKIDSDQDGFITLV 90
E +++QF + L E +++ +E KRRL A K D+DGF+T+V
Sbjct: 136 ESYDRQFVNPRVLAESVDSYMKRVTKKEIAEKRRL--FAMKNQPDEDGFVTVV 186
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 27.5 bits (58), Expect = 2.7
Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
Query: 18 VPTNEETKRLMDHLSDAEHYRNEHHNKQFDHDAFLGEDQAKTFDQLSPEESKRRLGEIAD 77
V E + R+ LSD +H F ED ++DQ SPE ++ R I+
Sbjct: 1061 VRLEELSTRVSKMLSDINEV--DHTIASLSLKLFQAEDTKNSYDQTSPEATQERNRTISS 1118
Query: 78 KI 79
K+
Sbjct: 1119 KL 1120
>SPBC543.02c |||DNAJ/TPR domain protein DNAJC7
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 476
Score = 27.5 bits (58), Expect = 2.7
Identities = 18/92 (19%), Positives = 39/92 (42%)
Query: 52 LGEDQAKTFDQLSPEESKRRLGEIADKIDSDQDGFITLVELKDWIRYTQKRYIDEDVERH 111
+GE + D + K + + +I +G L E + +++ Q ++R
Sbjct: 72 IGEFELALCDAKQSDRIKPDVPKTQSRIRQAYEGLSILNEAEVYLKNKQAGLALNALDRL 131
Query: 112 WRQQNPNNEEFVTWEAYRKNVYGFMDDMDEKE 143
R+ + + ++W + VY F +DMD +
Sbjct: 132 QRRIDSTTQPPMSWMYLKAQVYIFQNDMDRAQ 163
>SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 27.5 bits (58), Expect = 2.7
Identities = 15/58 (25%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 25 KRLMDHLSDAEHYRNEHHNKQFDHDAFLGEDQAK---TFDQLSPEESKRRLGEIADKI 79
+RL +HL +++ +H NK+ D + E++ K ++ PE K+ G +K+
Sbjct: 179 QRLAEHLENSKKTILQHDNKEEDKEIHSEENETKDEIKSEKKEPEIKKQEGGSSTEKV 236
>SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 723
Score = 26.6 bits (56), Expect = 4.7
Identities = 19/75 (25%), Positives = 31/75 (41%)
Query: 140 DEKELKAPNSEGFTYSNLQKRDRRRWTYADADQNDALNRTEFAAFLHPEDHSSMRDVVVL 199
+ + L+ N E T LQK +R +A D T LH DH R VL
Sbjct: 394 NREALEEQNKERVTALELQKSERPLAKQQNALLEDEGKPTPSHTLLHNRDHELERLEKVL 453
Query: 200 ETLEDIDKDQDGKVS 214
+ + + +++ +S
Sbjct: 454 KDIHAVYYEEENDIS 468
>SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1095
Score = 26.2 bits (55), Expect = 6.2
Identities = 9/31 (29%), Positives = 18/31 (58%)
Query: 257 DEHEVKDWIAPPEFDHAEAEARHLVFEADAD 287
+ E+++W+ + D E++A H+V E D
Sbjct: 327 EAEELQEWLNTDDLDQDESDANHVVAEQAMD 357
>SPBP35G2.09 |usp103|yhc1|U1 snRNP-associated protein Usp103
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 26.2 bits (55), Expect = 6.2
Identities = 10/35 (28%), Positives = 15/35 (42%)
Query: 18 VPTNEETKRLMDHLSDAEHYRNEHHNKQFDHDAFL 52
+P E +R H + H+ HH Q H F+
Sbjct: 146 LPQTNEHQRARTHSNANNHFTKTHHQGQRSHQRFV 180
>SPBC32H8.08c |||mannosyltransferase complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 25.8 bits (54), Expect = 8.3
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 155 SNLQKRDRRRWTYADADQNDALNRTEFAAFLHPEDHSSMRDVVVLETLEDIDKDQDGKVS 214
+++++R R + Y ND TEF + SS++ V+ + L + KD D K
Sbjct: 122 NSIERRFNRHFKYPYVFLNDEPFTTEFKKAVKDATDSSIQFGVLDDELWNFPKDVD-KDM 180
Query: 215 LDEYIGD 221
+DE I +
Sbjct: 181 IDESIAE 187
>SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 143
Score = 25.8 bits (54), Expect = 8.3
Identities = 12/59 (20%), Positives = 28/59 (47%)
Query: 61 DQLSPEESKRRLGEIADKIDSDQDGFITLVELKDWIRYTQKRYIDEDVERHWRQQNPNN 119
++L ES+ + D D G+I + D+++ ++ D +V+ ++ +P N
Sbjct: 69 NKLRETESEEEYIKAFRVFDKDNSGYIETAKFADYMKTLGEKLSDNEVQLMVQEADPTN 127
>SPBC13G1.08c |ash2||Ash2-trithorax family
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 652
Score = 25.8 bits (54), Expect = 8.3
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 108 VERHWRQQNPNNEEFVTWEA 127
+E HW+ P+ E+ TW+A
Sbjct: 159 IEEHWQLLCPDREKVQTWQA 178
>SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated
heterochromatin assembly Hrr1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1015
Score = 25.8 bits (54), Expect = 8.3
Identities = 12/56 (21%), Positives = 23/56 (41%)
Query: 125 WEAYRKNVYGFMDDMDEKELKAPNSEGFTYSNLQKRDRRRWTYADADQNDALNRTE 180
WE KN D++ E E + YSN+ D ++ + + ++T+
Sbjct: 17 WEMVNKNTEVVFDEIPEPETLSEMKRHPLYSNIFNADNNTTSFTEQIETSETSKTQ 72
>SPBC1198.05 |||guanylate kinase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 202
Score = 25.8 bits (54), Expect = 8.3
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 120 EEFVTWEAYRKNVYGFMDDMDEKELKAPNSEGFTYSNLQ 158
E+FV W + N+YG M +EL+A N + +LQ
Sbjct: 82 EKFVEWAVFSGNMYG-TSIMAIQELEAVNKKAILDIDLQ 119
>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1072
Score = 25.8 bits (54), Expect = 8.3
Identities = 12/47 (25%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 157 LQKRDRRRWTYADADQNDALNRTEFAAFLHPEDHSSMRDVVVLETLE 203
L R + RW Y + +N+T F+ P+D S + ++ T++
Sbjct: 925 LSDRKKLRW-YKKFYLGELINKTRHCTFIEPQDKSLVTPQLLCATVD 970
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.134 0.398
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,610,502
Number of Sequences: 5004
Number of extensions: 74654
Number of successful extensions: 232
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 217
Number of HSP's gapped (non-prelim): 21
length of query: 322
length of database: 2,362,478
effective HSP length: 73
effective length of query: 249
effective length of database: 1,997,186
effective search space: 497299314
effective search space used: 497299314
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 54 (25.8 bits)
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