GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001107-TA|BGIBMGA001107-PA|IPR002048|Calcium-binding
EF-hand
         (322 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    24   1.5  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    23   3.6  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    22   8.2  

>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 1/23 (4%)

Query: 238 KQEREQFTGYRDTNKDGFMDEHE 260
           K ERE +  YR+T+K+ F D  E
Sbjct: 284 KNERE-YRKYRETSKERFRDRRE 305


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 10/29 (34%), Positives = 17/29 (58%)

Query: 39  NEHHNKQFDHDAFLGEDQAKTFDQLSPEE 67
           N H+++ F  D  L ED   TF+Q + ++
Sbjct: 358 NLHNHQSFGMDFSLNEDFYPTFNQTNVDQ 386


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 15/58 (25%), Positives = 23/58 (39%), Gaps = 2/58 (3%)

Query: 39  NEHHNKQFDHDAFLGEDQAKTFDQLSPEESKRRLGEIADKIDSDQDGFITLVELKDWI 96
           N  H KQ  HD  L   Q    D+      K    E+A +I   ++    +V+  D +
Sbjct: 296 NTDHTKQLSHDVLLRAKQIGFSDKQIASVVKS--SELAVRIQRQENNIRPMVKQIDTV 351


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.134    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,810
Number of Sequences: 429
Number of extensions: 4356
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 9
Number of HSP's gapped (non-prelim): 3
length of query: 322
length of database: 140,377
effective HSP length: 58
effective length of query: 264
effective length of database: 115,495
effective search space: 30490680
effective search space used: 30490680
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 44 (21.8 bits)