GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001106-TA|BGIBMGA001106-PA|IPR008991|Translation protein
SH3-like, IPR001147|Ribosomal protein L21e
         (159 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    23   1.2  
AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory recept...    21   3.8  
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    21   5.0  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          20   8.7  

>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 23.0 bits (47), Expect = 1.2
 Identities = 8/11 (72%), Positives = 8/11 (72%)

Query: 53  PHKVYHGKTGR 63
           PH  Y GKTGR
Sbjct: 302 PHPTYFGKTGR 312


>AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory receptor
           candidate 48 protein.
          Length = 408

 Score = 21.4 bits (43), Expect = 3.8
 Identities = 10/23 (43%), Positives = 14/23 (60%)

Query: 136 KAAHIVSGTEKPVLLAPIPYEFV 158
           K  H++SGTE   L+ PI  + V
Sbjct: 200 KLNHLLSGTENLDLVLPIYSQLV 222


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 21.0 bits (42), Expect = 5.0
 Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 2/37 (5%)

Query: 84  IIPKRINIRVEHVKHSKCRQDFLKR--VKENERLLKE 118
           II KR   R ++ ++ KC    +KR  V+E  +  K+
Sbjct: 129 IIDKRQRNRCQYCRYQKCLNMGMKREAVQEERQRTKD 165


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 20.2 bits (40), Expect = 8.7
 Identities = 10/35 (28%), Positives = 16/35 (45%)

Query: 12  RDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNG 46
           +DL A+R    G + +    K Y+   +  I  NG
Sbjct: 757 KDLVAKRCEERGILFVPIPNKYYEAKQVYRIGSNG 791


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.321    0.138    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 36,483
Number of Sequences: 317
Number of extensions: 1358
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 159
length of database: 114,650
effective HSP length: 52
effective length of query: 107
effective length of database: 98,166
effective search space: 10503762
effective search space used: 10503762
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.4 bits)
S2: 40 (20.2 bits)