Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001106-TA|BGIBMGA001106-PA|IPR008991|Translation protein
SH3-like, IPR001147|Ribosomal protein L21e
(159 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein L21|Sch... 208 3e-55
SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein L21|Sc... 208 4e-55
SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomy... 25 4.0
SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyc... 25 5.3
SPAC17G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 5.3
SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr 2|... 25 7.1
SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2 |S... 25 7.1
SPCC1183.11 ||SPCC31H12.01|MS ion channel protein 1|Schizosaccha... 25 7.1
SPBC3B8.03 |||saccharopine dehydrogenase |Schizosaccharomyces po... 24 9.3
SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomy... 24 9.3
SPBC530.06c |||translation initiation factor eIF3 alpha subunit ... 24 9.3
SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyce... 24 9.3
>SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein
L21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 160
Score = 208 bits (508), Expect = 3e-55
Identities = 101/157 (64%), Positives = 116/157 (73%), Gaps = 1/157 (0%)
Query: 1 MTNSKGYRRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 60
M +S G R TR F R FR HG I LSTY+K YKVGDIVDI+ NGAVQKGMPHK YHGK
Sbjct: 1 MPHSYGIRARTRYTFQRGFREHGQIRLSTYLKTYKVGDIVDIKVNGAVQKGMPHKYYHGK 60
Query: 61 TGRVYNVTAHALGVIVNKRVRGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAK 120
TG VYNVT ++GV++ K V R + KR+N+R+EHVKHSKCRQDFL RVK NE KEAK
Sbjct: 61 TGVVYNVTQSSVGVLIYKVVGNRYMEKRVNVRIEHVKHSKCRQDFLDRVKANEAKRKEAK 120
Query: 121 AAGKTVNLKRQPAPPKAAHIVS-GTEKPVLLAPIPYE 156
A GKTV L+RQPAPP AH VS +PV L P+ Y+
Sbjct: 121 AQGKTVQLRRQPAPPATAHFVSTENNEPVTLHPVAYD 157
>SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein
L21|Schizosaccharomyces pombe|chr 2|||Manual
Length = 160
Score = 208 bits (507), Expect = 4e-55
Identities = 101/157 (64%), Positives = 116/157 (73%), Gaps = 1/157 (0%)
Query: 1 MTNSKGYRRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 60
M +S G R TR F R FR HG I LSTY+K YKVGDIVDI+ NGAVQKGMPHK YHGK
Sbjct: 1 MPHSYGIRARTRYTFQRGFREHGQIRLSTYLKTYKVGDIVDIKVNGAVQKGMPHKYYHGK 60
Query: 61 TGRVYNVTAHALGVIVNKRVRGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAK 120
TG VYNVT ++GV++ K V R + KR+N+R+EHVKHSKCRQDFL RVK NE KEAK
Sbjct: 61 TGVVYNVTQSSVGVLIYKVVGNRYMEKRVNVRIEHVKHSKCRQDFLDRVKANEAKRKEAK 120
Query: 121 AAGKTVNLKRQPAPPKAAHIVS-GTEKPVLLAPIPYE 156
A GKTV L+RQPAPP AH VS +PV L P+ Y+
Sbjct: 121 AQGKTVQLRRQPAPPAKAHFVSTENNEPVTLHPVAYD 157
>SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 354
Score = 25.4 bits (53), Expect = 4.0
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 83 RIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPK 136
R + K++ R H + K + D + E++++LKEA+A+ ++N +R P K
Sbjct: 141 RNLVKKVEKRELHSRPPKRKLDDV----ESKQILKEARASDASLNAERPLFPVK 190
>SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 358
Score = 25.0 bits (52), Expect = 5.3
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 100 KCRQDFLKRVKENERLLKEAKAAGKTVNLKRQ 131
K DF KR E +R+ +E A KTV L Q
Sbjct: 181 KKSDDFEKRESEKKRVAQEKVIAAKTVLLALQ 212
>SPAC17G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 433
Score = 25.0 bits (52), Expect = 5.3
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 118 EAKAAGKTVNLKRQPAPPKAAHIVSGT 144
+ KA K + +QP+PP A H + T
Sbjct: 344 DTKAGEKLTDSSKQPSPPVAEHFSNET 370
>SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 612
Score = 24.6 bits (51), Expect = 7.1
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 107 KRVKENERLLK-EAKAAGKTVNLKRQPAPPKAAHIVSGTEKPVL 149
K+ KE + LK E+ T + QP P SGTE V+
Sbjct: 269 KKKKEQKWTLKFESDKGTSTQCITHQPLPGSTPSFASGTENGVI 312
>SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 316
Score = 24.6 bits (51), Expect = 7.1
Identities = 12/41 (29%), Positives = 20/41 (48%)
Query: 107 KRVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVSGTEKP 147
K +++ ER+ K + NL+R PPK + +E P
Sbjct: 83 KILRDEERIKKRKIQKNRAANLQRTLQPPKRPTPSAASEVP 123
>SPCC1183.11 ||SPCC31H12.01|MS ion channel protein
1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1011
Score = 24.6 bits (51), Expect = 7.1
Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 14/93 (15%)
Query: 34 YKVGDIVDIRGNGAVQKGMPHKV------YHGKTGRVY---NVTAHALGVIVNKRVRGRI 84
Y VGD VD+ NG V M ++ + TG+V N + L ++ +R G
Sbjct: 658 YDVGDRVDVMINGTVTSAMVKEISIMSTEFRLLTGKVIQAPNSLLNTLWILNMRRSDGIA 717
Query: 85 IPKRINIR----VEHVKHSKCR-QDFLKRVKEN 112
P +N++ ++ ++ + + DFLK K +
Sbjct: 718 DPVTVNLKFGTTLQQIEQLRIKIIDFLKEEKRD 750
>SPBC3B8.03 |||saccharopine dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 450
Score = 24.2 bits (50), Expect = 9.3
Identities = 10/35 (28%), Positives = 18/35 (51%)
Query: 25 IPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHG 59
+ L K Y+ G +V+I G ++ P+ +Y G
Sbjct: 180 LALRNSAKFYENGKLVEIDGKDLMETAKPYFIYPG 214
>SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 361
Score = 24.2 bits (50), Expect = 9.3
Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 3/52 (5%)
Query: 95 HVKHSKCRQ-DFLKR--VKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVSG 143
H + K R D L +K +E K K N + APP +H ++G
Sbjct: 4 HCQEPKIRSLDMLSNSEIKPSENSQKTKVLLTKANNASNERAPPPLSHFIAG 55
>SPBC530.06c |||translation initiation factor eIF3 alpha subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 24.2 bits (50), Expect = 9.3
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 62 GRVYNVTAHALGVIVN 77
G+ YN+T+H G VN
Sbjct: 234 GKTYNITSHVSGFYVN 249
>SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 906
Score = 24.2 bits (50), Expect = 9.3
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 84 IIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGK 124
I+ K +NI++EH+ S Q L +E+ EA GK
Sbjct: 808 ILGKSVNIKLEHISDS--MQSVLDNYRESISKQNEAIEMGK 846
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.321 0.138 0.404
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 717,857
Number of Sequences: 5004
Number of extensions: 27935
Number of successful extensions: 78
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 68
Number of HSP's gapped (non-prelim): 13
length of query: 159
length of database: 2,362,478
effective HSP length: 68
effective length of query: 91
effective length of database: 2,022,206
effective search space: 184020746
effective search space used: 184020746
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 50 (24.2 bits)
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