Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001106-TA|BGIBMGA001106-PA|IPR008991|Translation protein
SH3-like, IPR001147|Ribosomal protein L21e
(159 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0310 - 16669565-16669822,16670558-16670794 175 1e-44
03_01_0290 + 2246791-2247027,2248089-2248346 175 1e-44
04_01_0589 + 7704262-7704429,7704718-7705540,7705844-7706484 30 0.76
01_06_1794 - 39919363-39920025 29 1.3
09_01_0142 - 2103224-2103864,2104264-2104399 29 1.8
01_01_0167 + 1422344-1424260,1424338-1424472,1424568-1424990,142... 29 2.3
09_02_0307 + 7131031-7131326,7131414-7131560,7132579-7132711,713... 28 3.1
02_05_0026 + 25168944-25168991,25169114-25169179,25169414-25169599 28 4.1
07_01_0174 - 1227871-1228043,1228303-1228423,1228519-1228588,122... 27 5.4
10_05_0007 + 7759814-7760063,7760367-7760507,7760580-7761007 27 7.1
09_02_0487 + 9828283-9829354,9830436-9830580,9830863-9831153,983... 27 7.1
08_02_0830 - 21617485-21618198 27 7.1
06_03_0846 - 25328224-25330613,25330716-25330794 27 7.1
06_01_0056 - 478424-478491,478587-478821,478916-478978,479102-47... 27 7.1
02_01_0030 - 183836-183903,183986-184453,184526-184604,184698-18... 27 7.1
09_02_0549 + 10485415-10486107 27 9.4
07_01_0453 + 3420727-3420800,3421666-3421792,3422348-3422431,342... 27 9.4
06_01_1185 + 10183666-10184469 27 9.4
04_03_0151 + 11905926-11906618 27 9.4
03_06_0053 - 31304153-31304752,31304844-31304930 27 9.4
>10_08_0310 - 16669565-16669822,16670558-16670794
Length = 164
Score = 175 bits (427), Expect = 1e-44
Identities = 83/158 (52%), Positives = 111/158 (70%), Gaps = 1/158 (0%)
Query: 1 MTNSKGYRRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 60
M G R TRDLFAR FR G IPL+TY++ YK+G+ VD++ NGAV KGMPHK YHG+
Sbjct: 1 MPAGHGLRARTRDLFARPFRKKGYIPLTTYLRTYKIGEHVDVKVNGAVHKGMPHKFYHGR 60
Query: 61 TGRVYNVTAHALGVIVNKRVRGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAK 120
TGRV+NVT A+GV +NK+V RII KRI++RVEHV+ S+C ++F R +N++L +AK
Sbjct: 61 TGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCTEEFRLRKIKNDQLKADAK 120
Query: 121 AAGKTVNLKRQPAPPKAAHIVSGTEKPVLLAPIPYEFV 158
A G+ ++ KRQP PK +V G + PIPY+ V
Sbjct: 121 ARGEVISTKRQPQGPKPGFMVEGATLET-VTPIPYDVV 157
>03_01_0290 + 2246791-2247027,2248089-2248346
Length = 164
Score = 175 bits (427), Expect = 1e-44
Identities = 83/158 (52%), Positives = 110/158 (69%), Gaps = 1/158 (0%)
Query: 1 MTNSKGYRRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 60
M G R TRDLFAR FR G IPL+TY++ YK+GD VD++ NGAV KGMPHK YHG+
Sbjct: 1 MPAGHGLRARTRDLFARPFRKKGYIPLTTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60
Query: 61 TGRVYNVTAHALGVIVNKRVRGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAK 120
TGRV+NVT A+GV +NK+V RII KRI++RVEHV+ S+C ++ R +N++L +AK
Sbjct: 61 TGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCTEELRLRKIKNDQLKADAK 120
Query: 121 AAGKTVNLKRQPAPPKAAHIVSGTEKPVLLAPIPYEFV 158
A G+ ++ KRQP PK +V G + PIPY+ V
Sbjct: 121 ARGEVISTKRQPEGPKPGFMVEGATLET-VTPIPYDVV 157
>04_01_0589 + 7704262-7704429,7704718-7705540,7705844-7706484
Length = 543
Score = 30.3 bits (65), Expect = 0.76
Identities = 28/94 (29%), Positives = 42/94 (44%), Gaps = 8/94 (8%)
Query: 61 TGRVYNVTAHALGVIVNKRVRGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAK 120
T R NV +IV VRGRI+P I ++H + K+ +EN L+ +
Sbjct: 409 TNRHLNVQPPPQRIIVKGTVRGRIVPPAIVSSLQHQRQQG------KQCQENNSSLQLQR 462
Query: 121 AAGKTVNLKRQPAP-PKAAHIVSGTEKPVLLAPI 153
+Q +P P + IVS + P +API
Sbjct: 463 GGTLLRQHPQQVSPAPGRSTIVSSSNAP-RIAPI 495
>01_06_1794 - 39919363-39920025
Length = 220
Score = 29.5 bits (63), Expect = 1.3
Identities = 15/46 (32%), Positives = 21/46 (45%)
Query: 108 RVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVSGTEKPVLLAPI 153
R ++ ++ EA AAG + KRQP PP SG A +
Sbjct: 27 RQQQQQQQQYEAAAAGDKTSAKRQPPPPSRLKKTSGRNDDAATAAV 72
>09_01_0142 - 2103224-2103864,2104264-2104399
Length = 258
Score = 29.1 bits (62), Expect = 1.8
Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 8/94 (8%)
Query: 61 TGRVYNVTAHALGVIVNKRVRGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAK 120
T R NV +IV VRGRI+P I ++H + K+ +EN L+ +
Sbjct: 124 TNRHLNVQPPPQRIIVKGTVRGRIVPPAIVSSLQHQRQQG------KQCQENNSSLQLQR 177
Query: 121 AAGKTVNLKRQPAP-PKAAHIVSGTEKPVLLAPI 153
+ +Q +P P +VS + P +API
Sbjct: 178 GSMLLRQHPQQVSPAPGRPTVVSSSNAP-RIAPI 210
>01_01_0167 +
1422344-1424260,1424338-1424472,1424568-1424990,
1425183-1425252,1425356-1425495,1425620-1425679,
1425776-1425931,1426272-1426541
Length = 1056
Score = 28.7 bits (61), Expect = 2.3
Identities = 11/24 (45%), Positives = 18/24 (75%)
Query: 34 YKVGDIVDIRGNGAVQKGMPHKVY 57
++ GDI+ I G+G+V K PH++Y
Sbjct: 623 FEDGDIIVIWGDGSVSKVGPHEIY 646
>09_02_0307 +
7131031-7131326,7131414-7131560,7132579-7132711,
7133115-7133207,7133421-7133717
Length = 321
Score = 28.3 bits (60), Expect = 3.1
Identities = 14/43 (32%), Positives = 22/43 (51%)
Query: 117 KEAKAAGKTVNLKRQPAPPKAAHIVSGTEKPVLLAPIPYEFVA 159
++A AA + L+ + A G E+P L P+PYE+ A
Sbjct: 77 RKAAAAAEADALRSAARQARTASSWYGDERPRWLGPVPYEYPA 119
>02_05_0026 + 25168944-25168991,25169114-25169179,25169414-25169599
Length = 99
Score = 27.9 bits (59), Expect = 4.1
Identities = 13/36 (36%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
Query: 96 VKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQ 131
++ +KCRQD++ VK++ +L+++ A K KRQ
Sbjct: 1 MRQAKCRQDYMAIVKQSRQLIEKLDA--KNEPKKRQ 34
>07_01_0174 -
1227871-1228043,1228303-1228423,1228519-1228588,
1228877-1228953,1229215-1229393,1229558-1229684,
1229849-1229861,1230351-1230378,1230426-1230516,
1230870-1230956,1231239-1231276,1231426-1231464,
1231553-1231699,1231899-1231958,1232033-1232111,
1232429-1232517,1232906-1232967,1233238-1233427,
1233929-1234068,1235813-1236147,1237086-1237133
Length = 730
Score = 27.5 bits (58), Expect = 5.4
Identities = 17/51 (33%), Positives = 24/51 (47%)
Query: 51 GMPHKVYHGKTGRVYNVTAHALGVIVNKRVRGRIIPKRINIRVEHVKHSKC 101
G P G T VY+V AH+ GVIV+ + I V+ ++H C
Sbjct: 137 GQPLLEMIGHTSLVYSVDAHSSGVIVSGSEDRSAKIWKDGICVQSIEHPGC 187
>10_05_0007 + 7759814-7760063,7760367-7760507,7760580-7761007
Length = 272
Score = 27.1 bits (57), Expect = 7.1
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 61 TGRVYNVTAHALGVIVNKRVRGRIIPKRINIRVEHVKH--SKCRQD 104
T R NV +IV VRGRI+P I ++H + +C+++
Sbjct: 138 TNRHLNVQPPPQRIIVKGTVRGRIVPPAIVSSLQHQRQQGKQCQEN 183
>09_02_0487 +
9828283-9829354,9830436-9830580,9830863-9831153,
9831984-9832032
Length = 518
Score = 27.1 bits (57), Expect = 7.1
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
Query: 109 VKENERLLKEAKAA--GKTVNLKRQPAPPKAAH-IVSGTEKPVLLAP 152
V+ +++ LK +A G N R P PP+A++ I G P+LL+P
Sbjct: 93 VQPSKKFLKSLEACIPGNCTN-GRLPTPPQASNDIEEGANMPLLLSP 138
>08_02_0830 - 21617485-21618198
Length = 237
Score = 27.1 bits (57), Expect = 7.1
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 99 SKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAA 138
S CR D ++R N+R L A +A + ++ ++P P K A
Sbjct: 149 SPCRADSVERWDSNKRPLSRASSAERW-DINKKPRPKKDA 187
>06_03_0846 - 25328224-25330613,25330716-25330794
Length = 822
Score = 27.1 bits (57), Expect = 7.1
Identities = 11/34 (32%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 60 KTGRVYNVTAHALGVIVNKRVRGRIIPKRINIRV 93
+TG ++V A+ V+ +R GR++ R+N+R+
Sbjct: 158 RTGE-FDVRANVYAVVAKRRDGGRLVLPRLNLRI 190
>06_01_0056 -
478424-478491,478587-478821,478916-478978,479102-479179,
479263-479354,479788-479866,479971-480104,480184-480523
Length = 362
Score = 27.1 bits (57), Expect = 7.1
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 13/55 (23%)
Query: 19 FRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGKTGRVYNVTAHALG 73
F T G IP Y+ G + + +G + G PHK+ R+Y++ + ALG
Sbjct: 110 FSTEGEIP-------YREGQSIGVIADGVDKNGKPHKL------RLYSIASSALG 151
>02_01_0030 -
183836-183903,183986-184453,184526-184604,184698-185183
Length = 366
Score = 27.1 bits (57), Expect = 7.1
Identities = 32/128 (25%), Positives = 53/128 (41%), Gaps = 21/128 (16%)
Query: 19 FRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGKTGRVYNVTAHALGVIVNK 78
F T G IP Y+ G + + +G + G PHK+ R+Y++ + A+G +
Sbjct: 114 FSTDGEIP-------YREGQSIGVIPDGIDKNGKPHKL------RLYSIASSAIGDFADS 160
Query: 79 RVRGRIIPKRI--NIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPK 136
+ + + + N + E VK C +FL +K + K G P P
Sbjct: 161 KTVSLCVKRLVYTNDQGEIVK-GVC-SNFLCDLKPG----SDVKITGPVGKEMLMPKDPN 214
Query: 137 AAHIVSGT 144
A I+ GT
Sbjct: 215 ATIIMLGT 222
>09_02_0549 + 10485415-10486107
Length = 230
Score = 26.6 bits (56), Expect = 9.4
Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 8/94 (8%)
Query: 61 TGRVYNVTAHALGVIVNKRVRGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAK 120
T R NV +IV V+GRI+P I ++H + K+ +EN L+ +
Sbjct: 96 TNRHLNVQPPPQRIIVKGTVKGRIVPPAIVSSLQHQRQQG------KQCQENNSSLQLQR 149
Query: 121 AAGKTVNLKRQP-APPKAAHIVSGTEKPVLLAPI 153
+ RQ + P +VS + P +API
Sbjct: 150 GSTLLRQHPRQVLSAPGRPTVVSSSNAP-RIAPI 182
>07_01_0453 +
3420727-3420800,3421666-3421792,3422348-3422431,
3422550-3422644,3423063-3423154,3423326-3423379,
3424221-3424273,3424472-3424539,3424777-3424852,
3425159-3425242,3425793-3425941,3426375-3426492,
3426583-3426699,3426950-3427170,3427503-3427536,
3427585-3427685,3427832-3427943,3428379-3428504,
3428579-3428716,3428808-3428858,3428938-3429050,
3430253-3430318,3430582-3430729,3430826-3430930,
3431017-3431118,3431495-3431567,3431647-3431813,
3431906-3432028
Length = 956
Score = 26.6 bits (56), Expect = 9.4
Identities = 12/42 (28%), Positives = 21/42 (50%)
Query: 91 IRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQP 132
I V ++ KC +D++ E L K + GK+V + + P
Sbjct: 421 IPVWYIVGKKCEEDYIVARSAEEALAKAQEKYGKSVEIYQDP 462
>06_01_1185 + 10183666-10184469
Length = 267
Score = 26.6 bits (56), Expect = 9.4
Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 8/92 (8%)
Query: 63 RVYNVTAHALGVIVNKRVRGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAA 122
R NV +IV VRGRI+P I ++H + K+ KEN L+ + +
Sbjct: 98 RHLNVQPPPQRIIVKGTVRGRIVPPAIVSSLQHQRQQG------KQCKENNSSLQLQRGS 151
Query: 123 GKTVNLKRQ-PAPPKAAHIVSGTEKPVLLAPI 153
+Q + P + +VS + P +API
Sbjct: 152 MLLHQHPQQVSSAPGRSTVVSSSNAP-RIAPI 182
>04_03_0151 + 11905926-11906618
Length = 230
Score = 26.6 bits (56), Expect = 9.4
Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 8/94 (8%)
Query: 61 TGRVYNVTAHALGVIVNKRVRGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAK 120
T R NV +IV V+GRI+P I ++H + K+ +EN L+ +
Sbjct: 96 TNRHLNVQPPPQRIIVKGTVKGRIVPPAIVSSLQHQRQQG------KQCQENNSSLQLQR 149
Query: 121 AAGKTVNLKRQ-PAPPKAAHIVSGTEKPVLLAPI 153
+ RQ + P +VS + P +API
Sbjct: 150 GSTLLRQHPRQASSAPGHPAVVSSSNAP-RIAPI 182
>03_06_0053 - 31304153-31304752,31304844-31304930
Length = 228
Score = 26.6 bits (56), Expect = 9.4
Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Query: 92 RVEHVKHSKCRQDFLKRVKENERLL---KEAKAAGKTVNLKRQPAPPKAAHIVSGTEKPV 148
R +H Q F E++ L+ ++A AA + KR+P P A +V + V
Sbjct: 150 RYSRNEHHSPGQSFSSSSTESDVLVTGVRDADAASPPYHHKRRPGPAAAFDVVQVDDGAV 209
Query: 149 LLAPIP 154
AP P
Sbjct: 210 QAAPPP 215
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.321 0.138 0.404
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,745,560
Number of Sequences: 37544
Number of extensions: 191243
Number of successful extensions: 504
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 493
Number of HSP's gapped (non-prelim): 21
length of query: 159
length of database: 14,793,348
effective HSP length: 76
effective length of query: 83
effective length of database: 11,940,004
effective search space: 991020332
effective search space used: 991020332
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 56 (26.6 bits)
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