Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001106-TA|BGIBMGA001106-PA|IPR008991|Translation protein
SH3-like, IPR001147|Ribosomal protein L21e
(159 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_40720| Best HMM Match : 7tm_3 (HMM E-Value=0) 149 8e-37
SB_49776| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.25
SB_31082| Best HMM Match : Motilin_ghrelin (HMM E-Value=0.23) 31 0.58
SB_1824| Best HMM Match : Cupin_3 (HMM E-Value=1.6) 29 1.4
SB_55854| Best HMM Match : NinE (HMM E-Value=2.1) 29 1.4
SB_52319| Best HMM Match : Rho_N (HMM E-Value=1.8e-07) 28 3.1
SB_36211| Best HMM Match : RVT_1 (HMM E-Value=0) 28 3.1
SB_24771| Best HMM Match : RVT_1 (HMM E-Value=0) 28 3.1
SB_8127| Best HMM Match : RVT_1 (HMM E-Value=0) 28 3.1
SB_57310| Best HMM Match : rve (HMM E-Value=2.5e-25) 28 3.1
SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.1
SB_25040| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.1
SB_13410| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.1
SB_45985| Best HMM Match : IQ (HMM E-Value=1.7e-37) 27 7.2
SB_23213| Best HMM Match : SH3_1 (HMM E-Value=9.2e-12) 27 7.2
SB_59432| Best HMM Match : MORN (HMM E-Value=9.3e-26) 27 7.2
SB_52888| Best HMM Match : FAD_binding_6 (HMM E-Value=0) 27 9.5
SB_22651| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.5
SB_19774| Best HMM Match : WWE (HMM E-Value=5.4e-24) 27 9.5
SB_1748| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.5
SB_24590| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.5
>SB_40720| Best HMM Match : 7tm_3 (HMM E-Value=0)
Length = 768
Score = 149 bits (362), Expect = 8e-37
Identities = 66/90 (73%), Positives = 79/90 (87%)
Query: 1 MTNSKGYRRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 60
MTN+KGYRRGTR +F+++FR G LSTY+K YKVGDIVD++ NGAVQKGMPHKVYHGK
Sbjct: 423 MTNTKGYRRGTRYMFSKKFRHRGVEHLSTYLKCYKVGDIVDVKANGAVQKGMPHKVYHGK 482
Query: 61 TGRVYNVTAHALGVIVNKRVRGRIIPKRIN 90
TGRVYNVT ALGV+VNK+V+G+I+ KRIN
Sbjct: 483 TGRVYNVTKRALGVVVNKQVKGKILAKRIN 512
>SB_49776| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 290
Score = 31.9 bits (69), Expect = 0.25
Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 3/83 (3%)
Query: 41 DIRGNGAVQKGMPHKVYHGKTGRVYNVTAHALGVIVNKRVRGRIIPKRINIRVEHVKHSK 100
DI G G+ GMP + G+V ++ A GV++ R ++ + H HSK
Sbjct: 102 DIEGTGSYNGGMPQEDLRNTIGQVADL--GAAGVVMWGNRRDENTSPQVCKHINHYIHSK 159
Query: 101 CRQDFLKRVKENERLLKEAKAAG 123
F+ R+K E K G
Sbjct: 160 L-GPFIHRMKTTAEKCSELKCRG 181
>SB_31082| Best HMM Match : Motilin_ghrelin (HMM E-Value=0.23)
Length = 565
Score = 30.7 bits (66), Expect = 0.58
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 105 FLKRVKENERLLKEAKAAGKTVNLKRQPA-PPKAAHIVSGTEKPVLLAPIP 154
F+KR + +R L+E A +NL ++PA P K + EKPV P P
Sbjct: 272 FVKRTQRRQRELEEVADA---INLAKRPAQPEKPLKFLVKVEKPVPRPPTP 319
>SB_1824| Best HMM Match : Cupin_3 (HMM E-Value=1.6)
Length = 305
Score = 29.5 bits (63), Expect = 1.4
Identities = 10/31 (32%), Positives = 19/31 (61%)
Query: 126 VNLKRQPAPPKAAHIVSGTEKPVLLAPIPYE 156
VN + PP A + ++ ++PVL P+P++
Sbjct: 130 VNKSKAETPPPAYYTITSNQEPVLNMPVPWQ 160
>SB_55854| Best HMM Match : NinE (HMM E-Value=2.1)
Length = 271
Score = 29.5 bits (63), Expect = 1.4
Identities = 13/40 (32%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 87 KRINIRVEH-VKHSKCRQDFLKRVKENERLLKEAKAAGKT 125
+RI ++H ++ K +QDF+ +KE RL +E+++ T
Sbjct: 39 ERIQSCIDHKLEERKIKQDFVTLIKERNRLGRESRSGAST 78
>SB_52319| Best HMM Match : Rho_N (HMM E-Value=1.8e-07)
Length = 1458
Score = 28.3 bits (60), Expect = 3.1
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 87 KRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVSGTEK 146
K I + EH + S C Q F + N + ++ + GKT + + K HI+S +EK
Sbjct: 413 KNIELLTEHWECSGCEQRFNRHDNYNRHVTEKRCSGGKTQLICK---GEKFKHIMSSSEK 469
>SB_36211| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 1020
Score = 28.3 bits (60), Expect = 3.1
Identities = 26/100 (26%), Positives = 42/100 (42%), Gaps = 2/100 (2%)
Query: 17 RRFRTHGTIPLSTYMKVYKVG--DIVDIRGNGAVQKGMPHKVYHGKTGRVYNVTAHALGV 74
R+ T T + + K ++G DI+ R +Q +P K++H ++ H
Sbjct: 482 RKKETPETKAMLRHWKKLELGKDDILRRRIGPRLQLVLPRKLHHLVYKELHEEMGHLGAE 541
Query: 75 IVNKRVRGRIIPKRINIRVEHVKHSKCRQDFLKRVKENER 114
V + R R R+ +EH S CR KR K +R
Sbjct: 542 RVLQLARDRFFWPRMQQDIEHYVTSVCRCIKQKRPKHAQR 581
>SB_24771| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 1387
Score = 28.3 bits (60), Expect = 3.1
Identities = 26/100 (26%), Positives = 42/100 (42%), Gaps = 2/100 (2%)
Query: 17 RRFRTHGTIPLSTYMKVYKVG--DIVDIRGNGAVQKGMPHKVYHGKTGRVYNVTAHALGV 74
R+ T T + + K ++G DI+ R +Q +P K++H ++ H
Sbjct: 719 RKKETPETKAMLRHWKKLELGKDDILRRRIGPRLQLVLPRKLHHLVYKELHEEMGHLGAE 778
Query: 75 IVNKRVRGRIIPKRINIRVEHVKHSKCRQDFLKRVKENER 114
V + R R R+ +EH S CR KR K +R
Sbjct: 779 RVLQLARDRFFWPRMQQDIEHYVTSVCRCIKQKRPKHAQR 818
>SB_8127| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 1623
Score = 28.3 bits (60), Expect = 3.1
Identities = 26/100 (26%), Positives = 42/100 (42%), Gaps = 2/100 (2%)
Query: 17 RRFRTHGTIPLSTYMKVYKVG--DIVDIRGNGAVQKGMPHKVYHGKTGRVYNVTAHALGV 74
R+ T T + + K ++G DI+ R +Q +P K++H ++ H
Sbjct: 1270 RKKETPETKAMLRHWKKLELGKDDILRRRIGPRLQLVLPRKLHHLGYKELHEEMGHLGAE 1329
Query: 75 IVNKRVRGRIIPKRINIRVEHVKHSKCRQDFLKRVKENER 114
V + R R R+ +EH S CR KR K +R
Sbjct: 1330 RVLQLARDRFFWPRMQQDIEHYVTSVCRCIKQKRPKHAQR 1369
>SB_57310| Best HMM Match : rve (HMM E-Value=2.5e-25)
Length = 440
Score = 28.3 bits (60), Expect = 3.1
Identities = 26/100 (26%), Positives = 42/100 (42%), Gaps = 2/100 (2%)
Query: 17 RRFRTHGTIPLSTYMKVYKVG--DIVDIRGNGAVQKGMPHKVYHGKTGRVYNVTAHALGV 74
R+ T T + + K ++G DI+ R +Q +P K++H ++ H
Sbjct: 166 RKKETPETKAMLRHWKKLELGKDDILRRRIGPRLQLVLPRKLHHLGYKELHEEMGHLGAE 225
Query: 75 IVNKRVRGRIIPKRINIRVEHVKHSKCRQDFLKRVKENER 114
V + R R R+ +EH S CR KR K +R
Sbjct: 226 RVLQLARDRFFWPRMQQDIEHYVTSVCRCIKQKRPKHAQR 265
>SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4529
Score = 28.3 bits (60), Expect = 3.1
Identities = 15/71 (21%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 87 KRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVSGTEK 146
+++ + K R + ++ + +RLL+++++ K L++ P P A + + E
Sbjct: 1536 RKLTVEQREPYRLKARDNRVRLKDQEKRLLRQSESEKKHAALEQPPTP--APQVETQPET 1593
Query: 147 PVLLAPIPYEF 157
P+ A P+ F
Sbjct: 1594 PIHQAASPFVF 1604
>SB_25040| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 456
Score = 28.3 bits (60), Expect = 3.1
Identities = 13/47 (27%), Positives = 26/47 (55%), Gaps = 5/47 (10%)
Query: 49 QKGMPHKVYHGKTGRVYNVTAHALGVIVNKRVRGRIIPKRINIRVEH 95
++G PH+ + G TGR A+ + +K + +++ +R NI + H
Sbjct: 108 KEGKPHENHSGLTGR-----RGAMRALASKDINAQLLKERFNINMPH 149
>SB_13410| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1984
Score = 28.3 bits (60), Expect = 3.1
Identities = 26/100 (26%), Positives = 42/100 (42%), Gaps = 2/100 (2%)
Query: 17 RRFRTHGTIPLSTYMKVYKVG--DIVDIRGNGAVQKGMPHKVYHGKTGRVYNVTAHALGV 74
R+ T T + + K ++G DI+ R +Q +P K++H ++ H
Sbjct: 1054 RKKETPETKAMLRHWKKLELGKDDILRRRIGPRLQLVLPRKLHHLVYKELHEEMGHLGAE 1113
Query: 75 IVNKRVRGRIIPKRINIRVEHVKHSKCRQDFLKRVKENER 114
V + R R R+ +EH S CR KR K +R
Sbjct: 1114 RVLQLARDRFFWPRMQQDIEHYVTSVCRCIKQKRPKHAQR 1153
>SB_45985| Best HMM Match : IQ (HMM E-Value=1.7e-37)
Length = 942
Score = 27.1 bits (57), Expect = 7.2
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Query: 70 HALGVIVNKRVRGRIIPKRINIRVEHVKH--SKCRQDFLK--RVKENERLL-KEAKAA 122
HA + + K RG + KR VE + +D L+ R+KE ER +EAKAA
Sbjct: 374 HAAALEIQKVYRGHVARKRYRAEVERQRQLAMLMEEDRLRRLRLKEEERRKDREAKAA 431
>SB_23213| Best HMM Match : SH3_1 (HMM E-Value=9.2e-12)
Length = 979
Score = 27.1 bits (57), Expect = 7.2
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 97 KHSKCR-QDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVSGTE 145
KH C+ +D LKR+ E +++ + + + K + +KR P KA S E
Sbjct: 294 KHLSCKVKDCLKRIGEVNQMMTKRENSLKRLVVKRPVQPVKALPANSNKE 343
>SB_59432| Best HMM Match : MORN (HMM E-Value=9.3e-26)
Length = 1362
Score = 27.1 bits (57), Expect = 7.2
Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 70 HALGVIVNKRVRGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTV 126
H++ +I + + +++P + V K K Q LK+ KE LK K++G +
Sbjct: 228 HSIALITDNTMEIKLLPHKSGNSVFMAKGKKITQKLLKKKKET---LKRKKSSGSKI 281
>SB_52888| Best HMM Match : FAD_binding_6 (HMM E-Value=0)
Length = 231
Score = 26.6 bits (56), Expect = 9.5
Identities = 10/18 (55%), Positives = 14/18 (77%)
Query: 27 LSTYMKVYKVGDIVDIRG 44
+S Y++ K+GD VDIRG
Sbjct: 147 MSQYLESLKIGDTVDIRG 164
>SB_22651| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 950
Score = 26.6 bits (56), Expect = 9.5
Identities = 17/66 (25%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
Query: 51 GMPHKVYHGKTGRVYNVTAHALGVIVNKRVRGRIIPKRIN-IRVEHVKHSKCRQDFLKRV 109
G H ++G +Y+ G + + +PK I + V+ KH C DF +
Sbjct: 43 GDEHSAVVTESGHLYSFGCGGDGQLGHGDAEDSHVPKIIEGLDVQKYKHLACGSDFSAAI 102
Query: 110 KENERL 115
EN L
Sbjct: 103 TENGEL 108
>SB_19774| Best HMM Match : WWE (HMM E-Value=5.4e-24)
Length = 729
Score = 26.6 bits (56), Expect = 9.5
Identities = 12/55 (21%), Positives = 27/55 (49%)
Query: 93 VEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVSGTEKP 147
V H ++ F+ ++++ +A+ G+ ++L +P AH++ EKP
Sbjct: 286 VMHKANALASGSFMATTPQSKQTKSKAQDGGRGLSLAGEPYSSHQAHLIQVFEKP 340
>SB_1748| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 683
Score = 26.6 bits (56), Expect = 9.5
Identities = 15/45 (33%), Positives = 21/45 (46%)
Query: 107 KRVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVSGTEKPVLLA 151
KR K + L+E + KT N ++ H + T PVLLA
Sbjct: 138 KRGKVKNKELEEESSTAKTKNFDGTRKEFESEHQLKSTNNPVLLA 182
>SB_24590| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 246
Score = 26.6 bits (56), Expect = 9.5
Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
Query: 60 KTGRVYNVTAHALGVIVNKRV--RGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLK 117
+TG+V T G ++ + RG + N H HS CRQ+ + K E + K
Sbjct: 112 RTGKVERRTPKVGGEMLGIPLVLRGILEMDPENALSHHSNHSFCRQEQHIQKKNTEEIEK 171
Query: 118 EAKAAGKTV 126
AK TV
Sbjct: 172 AAKNQSNTV 180
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.321 0.138 0.404
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,463,611
Number of Sequences: 59808
Number of extensions: 221502
Number of successful extensions: 482
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 470
Number of HSP's gapped (non-prelim): 21
length of query: 159
length of database: 16,821,457
effective HSP length: 77
effective length of query: 82
effective length of database: 12,216,241
effective search space: 1001731762
effective search space used: 1001731762
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 56 (26.6 bits)
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