GeneModel BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001106-TA|BGIBMGA001106-PA|IPR008991|Translation protein
SH3-like, IPR001147|Ribosomal protein L21e
         (159 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT001760-1|AAN71515.1|  159|Drosophila melanogaster RH06526p pro...   267   4e-72
AY071556-1|AAL49178.1|  159|Drosophila melanogaster RE62581p pro...   267   4e-72
AE014134-3588|AAF57259.1|  159|Drosophila melanogaster CG12775-P...   267   4e-72
AY875639-1|AAX59985.1| 1854|Drosophila melanogaster Dp205 protein.     30   1.3  
AE014297-2674|ABI31177.1| 1854|Drosophila melanogaster CG34157-P...    30   1.3  
U28966-1|AAB52512.1|  419|Drosophila melanogaster septin protein.      29   3.9  
AY061281-1|AAL28829.1|  419|Drosophila melanogaster LD20082p pro...    29   3.9  
AE014297-2823|AAF55783.1|  419|Drosophila melanogaster CG4173-PA...    29   3.9  
AF035251-1|AAC28563.1| 1354|Drosophila melanogaster tripeptidyl ...    28   5.2  
AE014297-110|AAF52119.1|  975|Drosophila melanogaster CG9783-PA ...    28   6.8  
AY051438-1|AAK92862.1|  452|Drosophila melanogaster GH10774p pro...    27   9.0  
AF132164-1|AAD34752.1|  969|Drosophila melanogaster unknown prot...    27   9.0  
AE014296-3650|AAG22184.1|  767|Drosophila melanogaster CG7139-PB...    27   9.0  
AE014296-3649|AAF51804.1|  969|Drosophila melanogaster CG7139-PA...    27   9.0  

>BT001760-1|AAN71515.1|  159|Drosophila melanogaster RH06526p
           protein.
          Length = 159

 Score =  267 bits (655), Expect = 4e-72
 Identities = 116/159 (72%), Positives = 141/159 (88%)

Query: 1   MTNSKGYRRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 60
           MTNSKGYRRGTRD+F+R FR HG IPLSTYM+V+K+GDIVDI+G+GAVQKG+P+K YHGK
Sbjct: 1   MTNSKGYRRGTRDMFSRPFRKHGVIPLSTYMRVFKIGDIVDIKGHGAVQKGLPYKAYHGK 60

Query: 61  TGRVYNVTAHALGVIVNKRVRGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAK 120
           TGR++NVT HA+GVIVNKRVRG+I+ KR+N+R+EH+ HSKCR+DFL+RVKENERLLKEAK
Sbjct: 61  TGRIFNVTQHAVGVIVNKRVRGKILAKRVNVRIEHIHHSKCREDFLRRVKENERLLKEAK 120

Query: 121 AAGKTVNLKRQPAPPKAAHIVSGTEKPVLLAPIPYEFVA 159
             G+ V+LKRQP  PK AH V   E+P+ LAPIPYEF+A
Sbjct: 121 EKGQWVSLKRQPEQPKKAHFVKKLEEPIALAPIPYEFIA 159


>AY071556-1|AAL49178.1|  159|Drosophila melanogaster RE62581p
           protein.
          Length = 159

 Score =  267 bits (655), Expect = 4e-72
 Identities = 116/159 (72%), Positives = 141/159 (88%)

Query: 1   MTNSKGYRRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 60
           MTNSKGYRRGTRD+F+R FR HG IPLSTYM+V+K+GDIVDI+G+GAVQKG+P+K YHGK
Sbjct: 1   MTNSKGYRRGTRDMFSRPFRKHGVIPLSTYMRVFKIGDIVDIKGHGAVQKGLPYKAYHGK 60

Query: 61  TGRVYNVTAHALGVIVNKRVRGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAK 120
           TGR++NVT HA+GVIVNKRVRG+I+ KR+N+R+EH+ HSKCR+DFL+RVKENERLLKEAK
Sbjct: 61  TGRIFNVTQHAVGVIVNKRVRGKILAKRVNVRIEHIHHSKCREDFLRRVKENERLLKEAK 120

Query: 121 AAGKTVNLKRQPAPPKAAHIVSGTEKPVLLAPIPYEFVA 159
             G+ V+LKRQP  PK AH V   E+P+ LAPIPYEF+A
Sbjct: 121 EKGQWVSLKRQPEQPKKAHFVKKLEEPIALAPIPYEFIA 159


>AE014134-3588|AAF57259.1|  159|Drosophila melanogaster CG12775-PA
           protein.
          Length = 159

 Score =  267 bits (655), Expect = 4e-72
 Identities = 116/159 (72%), Positives = 141/159 (88%)

Query: 1   MTNSKGYRRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 60
           MTNSKGYRRGTRD+F+R FR HG IPLSTYM+V+K+GDIVDI+G+GAVQKG+P+K YHGK
Sbjct: 1   MTNSKGYRRGTRDMFSRPFRKHGVIPLSTYMRVFKIGDIVDIKGHGAVQKGLPYKAYHGK 60

Query: 61  TGRVYNVTAHALGVIVNKRVRGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAK 120
           TGR++NVT HA+GVIVNKRVRG+I+ KR+N+R+EH+ HSKCR+DFL+RVKENERLLKEAK
Sbjct: 61  TGRIFNVTQHAVGVIVNKRVRGKILAKRVNVRIEHIHHSKCREDFLRRVKENERLLKEAK 120

Query: 121 AAGKTVNLKRQPAPPKAAHIVSGTEKPVLLAPIPYEFVA 159
             G+ V+LKRQP  PK AH V   E+P+ LAPIPYEF+A
Sbjct: 121 EKGQWVSLKRQPEQPKKAHFVKKLEEPIALAPIPYEFIA 159


>AY875639-1|AAX59985.1| 1854|Drosophila melanogaster Dp205 protein.
          Length = 1854

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 14/52 (26%), Positives = 25/52 (48%)

Query: 67  VTAHALGVIVNKRVRGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKE 118
           V     G+   +R +  IIP   N ++E  +HS    +   ++ +N RL+ E
Sbjct: 612 VNGQTNGIPTRRRPKSSIIPSSSNGKLEQREHSLVTSESFHQISDNLRLMSE 663


>AE014297-2674|ABI31177.1| 1854|Drosophila melanogaster CG34157-PD,
           isoform D protein.
          Length = 1854

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 14/52 (26%), Positives = 25/52 (48%)

Query: 67  VTAHALGVIVNKRVRGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKE 118
           V     G+   +R +  IIP   N ++E  +HS    +   ++ +N RL+ E
Sbjct: 612 VNGQTNGIPTRRRPKSSIIPSSSNGKLEQREHSLVTSESFHQISDNLRLMSE 663


>U28966-1|AAB52512.1|  419|Drosophila melanogaster septin protein.
          Length = 419

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 22/53 (41%), Positives = 27/53 (50%), Gaps = 3/53 (5%)

Query: 87  KRINIRVE-HVKHSKCRQDFLKRVKENERLLKEAK--AAGKTVNLKRQPAPPK 136
           KR N   E   K  + RQ F++RVKE E  LKE++     K   LKR  A  K
Sbjct: 328 KRSNHLAELQSKEEEVRQMFVQRVKEKEAELKESEKDLHAKFEKLKRDHAEEK 380


>AY061281-1|AAL28829.1|  419|Drosophila melanogaster LD20082p
           protein.
          Length = 419

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 22/53 (41%), Positives = 27/53 (50%), Gaps = 3/53 (5%)

Query: 87  KRINIRVE-HVKHSKCRQDFLKRVKENERLLKEAK--AAGKTVNLKRQPAPPK 136
           KR N   E   K  + RQ F++RVKE E  LKE++     K   LKR  A  K
Sbjct: 328 KRSNHLAELQSKEEEVRQMFVQRVKEKEAELKESEKDLHAKFEKLKRDHAEEK 380


>AE014297-2823|AAF55783.1|  419|Drosophila melanogaster CG4173-PA
           protein.
          Length = 419

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 22/53 (41%), Positives = 27/53 (50%), Gaps = 3/53 (5%)

Query: 87  KRINIRVE-HVKHSKCRQDFLKRVKENERLLKEAK--AAGKTVNLKRQPAPPK 136
           KR N   E   K  + RQ F++RVKE E  LKE++     K   LKR  A  K
Sbjct: 328 KRSNHLAELQSKEEEVRQMFVQRVKEKEAELKESEKDLHAKFEKLKRDHAEEK 380


>AF035251-1|AAC28563.1| 1354|Drosophila melanogaster tripeptidyl
            peptidase II protein.
          Length = 1354

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 3/46 (6%)

Query: 40   VDIRGNGAVQKGMPHKVYHGKTGRVYNVTAHALGVIVNKRVRGRII 85
            VD   + A+Q G+ H   HG  GR+Y    + + +I  KR R   +
Sbjct: 1279 VDANDSKAIQFGLWHAYAHGHYGRMYK---YVVKLIEEKRTRDHFV 1321


>AE014297-110|AAF52119.1|  975|Drosophila melanogaster CG9783-PA
           protein.
          Length = 975

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 13/40 (32%), Positives = 20/40 (50%)

Query: 108 RVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVSGTEKP 147
           R   N    + +  AG++V +K +  PP  A + SGT  P
Sbjct: 615 RTSTNPSSSQSSSLAGESVEVKVEITPPTNADLASGTNLP 654


>AY051438-1|AAK92862.1|  452|Drosophila melanogaster GH10774p
           protein.
          Length = 452

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 11/26 (42%), Positives = 16/26 (61%)

Query: 128 LKRQPAPPKAAHIVSGTEKPVLLAPI 153
           +  +P PPK+ + VSG   P  LAP+
Sbjct: 374 IHHKPKPPKSDYPVSGEFNPAALAPL 399


>AF132164-1|AAD34752.1|  969|Drosophila melanogaster unknown
           protein.
          Length = 969

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 14/41 (34%), Positives = 21/41 (51%)

Query: 114 RLLKEAKAAGKTVNLKRQPAPPKAAHIVSGTEKPVLLAPIP 154
           +L+KE K + +   L+  P  P    I S  E  +L AP+P
Sbjct: 253 QLMKETKYSVELPQLRNHPPLPAVPIITSFEESKLLEAPVP 293


>AE014296-3650|AAG22184.1|  767|Drosophila melanogaster CG7139-PB,
           isoform B protein.
          Length = 767

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 23/91 (25%), Positives = 43/91 (47%), Gaps = 11/91 (12%)

Query: 75  IVNKRVRGRIIPKRINI----RVEHVKHSKCRQ--DFLKRVKENER-----LLKEAKAAG 123
           +V+++V G +   R  +    RV +++ S+C     +   +++  R     L+KE K + 
Sbjct: 1   MVSQKVAGNLRNSRFFVAERRRVSNIRGSECGSLATYTYNLRQLARFHFLLLMKETKYSV 60

Query: 124 KTVNLKRQPAPPKAAHIVSGTEKPVLLAPIP 154
           +   L+  P  P    I S  E  +L AP+P
Sbjct: 61  ELPQLRNHPPLPAVPIITSFEESKLLEAPVP 91


>AE014296-3649|AAF51804.1|  969|Drosophila melanogaster CG7139-PA,
           isoform A protein.
          Length = 969

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 14/41 (34%), Positives = 21/41 (51%)

Query: 114 RLLKEAKAAGKTVNLKRQPAPPKAAHIVSGTEKPVLLAPIP 154
           +L+KE K + +   L+  P  P    I S  E  +L AP+P
Sbjct: 253 QLMKETKYSVELPQLRNHPPLPAVPIITSFEESKLLEAPVP 293


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.321    0.138    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,903,707
Number of Sequences: 52641
Number of extensions: 317705
Number of successful extensions: 817
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 808
Number of HSP's gapped (non-prelim): 14
length of query: 159
length of database: 24,830,863
effective HSP length: 79
effective length of query: 80
effective length of database: 20,672,224
effective search space: 1653777920
effective search space used: 1653777920
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 58 (27.5 bits)