Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001106-TA|BGIBMGA001106-PA|IPR008991|Translation protein
SH3-like, IPR001147|Ribosomal protein L21e
(159 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L15188-7|AAA27951.1| 161|Caenorhabditis elegans Ribosomal prote... 206 6e-54
AF078787-7|AAC26954.2| 518|Caenorhabditis elegans Vegf (vascula... 30 0.67
U00047-4|AAA50690.1| 825|Caenorhabditis elegans Hypothetical pr... 29 1.2
Z46267-9|CAA86427.2| 889|Caenorhabditis elegans Hypothetical pr... 29 2.0
AL110490-7|CAD59175.1| 533|Caenorhabditis elegans Hypothetical ... 27 6.3
AL110490-6|CAB54442.2| 687|Caenorhabditis elegans Hypothetical ... 27 6.3
Z68218-4|CAA92474.1| 329|Caenorhabditis elegans Hypothetical pr... 27 8.3
AF025457-7|AAB70967.1| 431|Caenorhabditis elegans Hypothetical ... 27 8.3
>L15188-7|AAA27951.1| 161|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 21 protein.
Length = 161
Score = 206 bits (503), Expect = 6e-54
Identities = 100/161 (62%), Positives = 120/161 (74%), Gaps = 2/161 (1%)
Query: 1 MTNSKGYRRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 60
MTNSKG RRGTR +FAR FR HG LSTY YK GD+VDI+ NGA QKGMP K YHG+
Sbjct: 1 MTNSKGLRRGTRYMFARDFRKHGVEHLSTYYTQYKRGDLVDIKTNGAFQKGMPFKAYHGR 60
Query: 61 TGRVYNVTAHALGVIVNKRVRGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAK 120
TGR++NVT A+G+IVNKRVRG I+PKRINIR+EH+K SKCR DFL RVK N+ K AK
Sbjct: 61 TGRIFNVTRGAVGIIVNKRVRGNILPKRINIRIEHIKPSKCRTDFLNRVKSNDEKRKAAK 120
Query: 121 AAGKTV-NLKRQPAPPKAAH-IVSGTEKPVLLAPIPYEFVA 159
+AG+ V LKR P P+ AH + + +P LLAP+ +E VA
Sbjct: 121 SAGQPVPALKRLPVAPRGAHTVTTQNNEPELLAPLRFEIVA 161
>AF078787-7|AAC26954.2| 518|Caenorhabditis elegans Vegf (vascular
endothelial growthfactor) receptor family protein 2
protein.
Length = 518
Score = 30.3 bits (65), Expect = 0.67
Identities = 18/73 (24%), Positives = 29/73 (39%)
Query: 46 GAVQKGMPHKVYHGKTGRVYNVTAHALGVIVNKRVRGRIIPKRINIRVEHVKHSKCRQDF 105
G +QK PH + K V + ++ + + G + K + H K+ C D
Sbjct: 51 GLLQKVDPHSLIEYKIRLQVAVKRYGFLYVITEYINGGDLLKYLRKLRSHFKNELCNNDI 110
Query: 106 LKRVKENERLLKE 118
+ V E E KE
Sbjct: 111 VLHVSEKESCEKE 123
>U00047-4|AAA50690.1| 825|Caenorhabditis elegans Hypothetical
protein ZK418.6 protein.
Length = 825
Score = 29.5 bits (63), Expect = 1.2
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 127 NLKRQPAPPKAAHIVSGTE 145
NL+R+PAPPK H+ S E
Sbjct: 462 NLRRRPAPPKQNHVASPAE 480
>Z46267-9|CAA86427.2| 889|Caenorhabditis elegans Hypothetical
protein F49E2.5d protein.
Length = 889
Score = 28.7 bits (61), Expect = 2.0
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 93 VEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVN-LKRQPAPPKAAHIVSGTEKPVLLA 151
VE+V + K+N++ K++++ T ++ PAPP+ +V EKPV A
Sbjct: 361 VENVVEKSTTPPATENKKKNKKDKKKSESEKVTEQPVESAPAPPQVEQVVEKVEKPV--A 418
Query: 152 PI 153
P+
Sbjct: 419 PV 420
>AL110490-7|CAD59175.1| 533|Caenorhabditis elegans Hypothetical
protein Y48B6A.6b protein.
Length = 533
Score = 27.1 bits (57), Expect = 6.3
Identities = 16/72 (22%), Positives = 29/72 (40%)
Query: 85 IPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVSGT 144
+P R+ V+ + ++ +R KE+E + + + + R P PP I
Sbjct: 207 LPPTPPARITSVRSDESIEEEERRRKESEETASFEELEAEIMRISRSPVPPPVLSIPPPP 266
Query: 145 EKPVLLAPIPYE 156
+ L IP E
Sbjct: 267 PPNIPLPTIPQE 278
>AL110490-6|CAB54442.2| 687|Caenorhabditis elegans Hypothetical
protein Y48B6A.6a protein.
Length = 687
Score = 27.1 bits (57), Expect = 6.3
Identities = 16/72 (22%), Positives = 29/72 (40%)
Query: 85 IPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKRQPAPPKAAHIVSGT 144
+P R+ V+ + ++ +R KE+E + + + + R P PP I
Sbjct: 207 LPPTPPARITSVRSDESIEEEERRRKESEETASFEELEAEIMRISRSPVPPPVLSIPPPP 266
Query: 145 EKPVLLAPIPYE 156
+ L IP E
Sbjct: 267 PPNIPLPTIPQE 278
>Z68218-4|CAA92474.1| 329|Caenorhabditis elegans Hypothetical
protein K01H12.4 protein.
Length = 329
Score = 26.6 bits (56), Expect = 8.3
Identities = 29/98 (29%), Positives = 42/98 (42%), Gaps = 7/98 (7%)
Query: 66 NVTAHALGVIVNKRVRGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKT 125
+++A NK + + I K +E +KH KCR LK+ K ++ K AG T
Sbjct: 143 SISATTASSCSNKSLYRKHIEKLAIEPLEDIKHLKCRG--LKKSKPDDLFPKATYDAG-T 199
Query: 126 VNLKRQPAPPKAAHI----VSGTEKPVLLAPIPYEFVA 159
K +P + S T K LA P EFV+
Sbjct: 200 GKPKMALSPSSMVSVDLSYASTTAKSNSLAYQPMEFVS 237
>AF025457-7|AAB70967.1| 431|Caenorhabditis elegans Hypothetical
protein C08E3.8 protein.
Length = 431
Score = 26.6 bits (56), Expect = 8.3
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 89 INIRVEHVKHSKCRQDFLKRVKENERL 115
+N+ +EH H +C +D R KE + +
Sbjct: 290 LNVPIEHCLHFECFKDHFVRFKEEDAM 316
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.321 0.138 0.404
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,883,810
Number of Sequences: 27539
Number of extensions: 153498
Number of successful extensions: 448
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 440
Number of HSP's gapped (non-prelim): 9
length of query: 159
length of database: 12,573,161
effective HSP length: 76
effective length of query: 83
effective length of database: 10,480,197
effective search space: 869856351
effective search space used: 869856351
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 56 (26.6 bits)
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