Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001106-TA|BGIBMGA001106-PA|IPR008991|Translation protein
SH3-like, IPR001147|Ribosomal protein L21e
(159 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g57860.1 68414.m06565 60S ribosomal protein L21 similar to 60... 181 2e-46
At1g57660.1 68414.m06543 60S ribosomal protein L21 (RPL21E) simi... 181 2e-46
At1g09690.1 68414.m01088 60S ribosomal protein L21 (RPL21C) Simi... 180 3e-46
At1g09590.1 68414.m01076 60S ribosomal protein L21 (RPL21A) Simi... 180 3e-46
At2g43900.1 68415.m05457 endonuclease/exonuclease/phosphatase fa... 28 2.6
At2g43030.1 68415.m05340 ribosomal protein L3 family protein con... 28 2.6
At1g04310.1 68414.m00422 ethylene receptor-related similar to et... 28 2.6
At2g23770.1 68415.m02839 protein kinase family protein / peptido... 28 3.4
At1g20020.1 68414.m02507 ferredoxin--NADP(+) reductase, putative... 28 3.4
At4g31490.1 68417.m04473 coatomer beta subunit, putative / beta-... 27 4.5
At2g35080.1 68415.m04304 expressed protein ; expression supporte... 27 4.5
At1g62330.1 68414.m07033 expressed protein contains Pfam PF03138... 27 4.5
At3g63530.1 68416.m07156 zinc finger (C3HC4-type RING finger) fa... 27 5.9
At5g63320.1 68418.m07946 expressed protein 27 7.8
>At1g57860.1 68414.m06565 60S ribosomal protein L21 similar to 60S
ribosomal protein L21 GI:3885884 from [Oryza sativa]
Length = 164
Score = 181 bits (441), Expect = 2e-46
Identities = 85/158 (53%), Positives = 112/158 (70%), Gaps = 1/158 (0%)
Query: 1 MTNSKGYRRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 60
M G R TRDLFAR FR G IPLSTY++ +KVGD VD++ NGA+ KGMPHK YHG+
Sbjct: 1 MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60
Query: 61 TGRVYNVTAHALGVIVNKRVRGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAK 120
TGR++NVT A+GV VNK++ RII KRI++RVEHV+ S+C ++F R K+N+ L +AK
Sbjct: 61 TGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKQNDVLKADAK 120
Query: 121 AAGKTVNLKRQPAPPKAAHIVSGTEKPVLLAPIPYEFV 158
A G+T++ KRQP PK +V G + PIPY+ V
Sbjct: 121 ARGETISTKRQPKGPKPGFMVEGMTLET-VTPIPYDVV 157
>At1g57660.1 68414.m06543 60S ribosomal protein L21 (RPL21E) similar
to 60S ribosomal protein L21 GB:Q43291 GI:2851508 from
[Arabidopsis thaliana]
Length = 164
Score = 181 bits (441), Expect = 2e-46
Identities = 85/158 (53%), Positives = 112/158 (70%), Gaps = 1/158 (0%)
Query: 1 MTNSKGYRRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 60
M G R TRDLFAR FR G IPLSTY++ +KVGD VD++ NGA+ KGMPHK YHG+
Sbjct: 1 MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60
Query: 61 TGRVYNVTAHALGVIVNKRVRGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAK 120
TGR++NVT A+GV VNK++ RII KRI++RVEHV+ S+C ++F R K+N+ L +AK
Sbjct: 61 TGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKQNDVLKADAK 120
Query: 121 AAGKTVNLKRQPAPPKAAHIVSGTEKPVLLAPIPYEFV 158
A G+T++ KRQP PK +V G + PIPY+ V
Sbjct: 121 ARGETISTKRQPKGPKPGFMVEGMTLET-VTPIPYDVV 157
>At1g09690.1 68414.m01088 60S ribosomal protein L21 (RPL21C) Similar
to ribosomal protein L21 (gb|L38826). ESTs
gb|AA395597,gb|ATTS5197 come from this gene
Length = 164
Score = 180 bits (439), Expect = 3e-46
Identities = 85/158 (53%), Positives = 111/158 (70%), Gaps = 1/158 (0%)
Query: 1 MTNSKGYRRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 60
M G R TRDLFAR FR G IPLSTY++ +KVGD VD++ NGA+ KGMPHK YHG+
Sbjct: 1 MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60
Query: 61 TGRVYNVTAHALGVIVNKRVRGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAK 120
TGR++NVT A+GV VNK++ RII KRI++RVEHV+ S+C ++F R K+N+ L AK
Sbjct: 61 TGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKKNDELKAAAK 120
Query: 121 AAGKTVNLKRQPAPPKAAHIVSGTEKPVLLAPIPYEFV 158
A G+T++ KRQP PK +V G + PIPY+ V
Sbjct: 121 ANGETISTKRQPKGPKPGFMVEGMTLET-VTPIPYDVV 157
>At1g09590.1 68414.m01076 60S ribosomal protein L21 (RPL21A) Similar
to L21 family of ribosomal protein; amino acid sequence
is identical to F21M12.8
Length = 164
Score = 180 bits (439), Expect = 3e-46
Identities = 85/158 (53%), Positives = 111/158 (70%), Gaps = 1/158 (0%)
Query: 1 MTNSKGYRRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 60
M G R TRDLFAR FR G IPLSTY++ +KVGD VD++ NGA+ KGMPHK YHG+
Sbjct: 1 MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60
Query: 61 TGRVYNVTAHALGVIVNKRVRGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAK 120
TGR++NVT A+GV VNK++ RII KRI++RVEHV+ S+C ++F R K+N+ L AK
Sbjct: 61 TGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKKNDELKAAAK 120
Query: 121 AAGKTVNLKRQPAPPKAAHIVSGTEKPVLLAPIPYEFV 158
A G+T++ KRQP PK +V G + PIPY+ V
Sbjct: 121 ANGETISTKRQPKGPKPGFMVEGMTLET-VTPIPYDVV 157
>At2g43900.1 68415.m05457 endonuclease/exonuclease/phosphatase
family protein belongs to Pfam:PF03372:
Endonuclease/Exonuclease/phosphatase family; contains 3
WD-40 repeats (PF00400);similar to Type II
inositol-1,4,5-trisphosphate 5-phosphatase EC 3.1.3.56
(5PTASE) (INPP5B) (SP:P32019) [Homo sapiens]
Length = 1305
Score = 28.3 bits (60), Expect = 2.6
Identities = 10/28 (35%), Positives = 20/28 (71%)
Query: 88 RINIRVEHVKHSKCRQDFLKRVKENERL 115
+ ++++EHV S RQ+F + +K NE++
Sbjct: 920 KFHVKIEHVDRSVRRQEFGRIIKTNEKV 947
>At2g43030.1 68415.m05340 ribosomal protein L3 family protein
contains Pfam profile PF00297: ribosomal protein L3
Length = 271
Score = 28.3 bits (60), Expect = 2.6
Identities = 29/104 (27%), Positives = 50/104 (48%), Gaps = 6/104 (5%)
Query: 32 KVYKVGDIVDIRGNGAVQKGMPH--KVYHGKTGRV-YNVTAH-ALGVIVNKRVRGRIIP- 86
+++K GD+VD+ G + KG K +H K G++ + +H ALG I GR+
Sbjct: 155 EIFKEGDLVDVAGT-TIGKGFQGGIKRHHFKRGQMTHGSKSHRALGSIGAGTTPGRVYKG 213
Query: 87 KRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVNLKR 130
K++ R+ + + +K KE ++ + GK NL R
Sbjct: 214 KKMPGRMGGTRTKIRKLKIVKVDKELNVVMIKGALPGKPGNLLR 257
>At1g04310.1 68414.m00422 ethylene receptor-related similar to
ethylene receptor CS-ETR2 [Cucumis sativus] GI:6136818;
contains Pfam profiles PF01590: GAF domain, PF00512: His
Kinase A (phosphoacceptor) domain
Length = 645
Score = 28.3 bits (60), Expect = 2.6
Identities = 11/37 (29%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 48 VQKGMPHKVYHGKTGRVYNVTAHALGVIVNKRVRGRI 84
V + +P V G +V+ H LGV++N++++G +
Sbjct: 483 VYRALPDYVV-GDDRKVFQAILHMLGVLMNRKIKGNV 518
>At2g23770.1 68415.m02839 protein kinase family protein /
peptidoglycan-binding LysM domain-containing protein
contains Pfam domains, PF00069: Protein kinase domain
and PF01476: LysM domain
Length = 612
Score = 27.9 bits (59), Expect = 3.4
Identities = 28/118 (23%), Positives = 50/118 (42%), Gaps = 15/118 (12%)
Query: 10 GTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGKTGRVYNVTA 69
GTR A + HG + ST + VY G ++ G + ++ GK
Sbjct: 504 GTRGYLAPEYLEHGLV--STKLDVYAFGVVLLEIVTGKEASELKKEIDEGK--------- 552
Query: 70 HALGVIVNKRVRGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVN 127
A+ I+ + GR++P+ + VE + ++D L R +E ++ +K T N
Sbjct: 553 -AIDEIL---IHGRLLPEGLTSFVERLVVDCLKKDHLNRPSMDENVMSLSKILAATQN 606
>At1g20020.1 68414.m02507 ferredoxin--NADP(+) reductase, putative /
adrenodoxin reductase, putative strong similarity to
Ferredoxin--NADP reductase, chloroplast precursor (EC
1.18.1.2) (FNR) from {Pisum sativum} SP|P10933,
{Mesembryanthemum crystallinum} SP|P41343, {Spinacia
oleracea} SP|P00455, [Capsicum annuum] GI:6899972
Length = 369
Score = 27.9 bits (59), Expect = 3.4
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 6/44 (13%)
Query: 34 YKVGDIVDIRGNGAVQKGMPHKVYHGKTGRVYNVTAHALGVIVN 77
Y+ G V + +G + G PHKV R+Y++ + ALG + N
Sbjct: 125 YREGQSVGVIADGIDKNGKPHKV------RLYSIASSALGDLGN 162
>At4g31490.1 68417.m04473 coatomer beta subunit, putative /
beta-coat protein, putative / beta-COP, putative similar
to Coatomer beta subunit (Beta-coat protein) (Beta-COP)
from {Rattus norvegicus} SP|P23514, {Mus musculus}
SP|Q9JIF7, {Homo sapiens} SP|P53618; contains Pfam
profile: PF01602 Adaptin N terminal region
Length = 948
Score = 27.5 bits (58), Expect = 4.5
Identities = 12/39 (30%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 90 NIRVEHVKHSKCRQDFLKRVKENE-RLLKEAKAAGKTVN 127
N+ ++ + CRQ F+K + E + R ++E KA +T +
Sbjct: 628 NVEMKKIWLESCRQSFVKMISEKQLREMEELKAKTQTTH 666
>At2g35080.1 68415.m04304 expressed protein ; expression supported
by MPSS
Length = 242
Score = 27.5 bits (58), Expect = 4.5
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 92 RVEHVKHSKCRQDFLKRVKENERLLK 117
R E VK +K R L++VK NE+ +K
Sbjct: 209 RTEEVKEAKARNQRLRKVKINEQWIK 234
>At1g62330.1 68414.m07033 expressed protein contains Pfam PF03138:
Plant protein family. The function of this family of
plant proteins is unknown;
Length = 672
Score = 27.5 bits (58), Expect = 4.5
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 51 GMPHKVYHGKTGRVYNVTAHALGVIVNK 78
G P K Y+G GR+ AHAL NK
Sbjct: 182 GKPKKTYNGTYGRLLAYAAHALAEGQNK 209
>At3g63530.1 68416.m07156 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 248
Score = 27.1 bits (57), Expect = 5.9
Identities = 19/81 (23%), Positives = 42/81 (51%), Gaps = 6/81 (7%)
Query: 29 TYMKVYKVGDIVDIRGNGAVQK---GMPHKVYHGKTGRVYNVTAHALGVIVNKRVRGRII 85
TY ++ ++G+ V G Q+ +P K Y K G +++ ++ + ++ +I
Sbjct: 151 TYEELVELGEAVGTESRGLSQELIETLPTKKY--KFGSIFSRKRAGERCVICQ-LKYKIG 207
Query: 86 PKRINIRVEHVKHSKCRQDFL 106
+++N+ +HV HS+C +L
Sbjct: 208 ERQMNLPCKHVYHSECISKWL 228
>At5g63320.1 68418.m07946 expressed protein
Length = 569
Score = 26.6 bits (56), Expect = 7.8
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 102 RQDFLKRVKEN-ERLLKEAKAAGKTVNLKRQPAPPKA 137
R++F KR++E ERL EAKAA + + A KA
Sbjct: 103 REEFEKRLREEKERLQAEAKAAEEARRKAKAEAAEKA 139
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.321 0.138 0.404
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,767,976
Number of Sequences: 28952
Number of extensions: 152448
Number of successful extensions: 388
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 380
Number of HSP's gapped (non-prelim): 14
length of query: 159
length of database: 12,070,560
effective HSP length: 76
effective length of query: 83
effective length of database: 9,870,208
effective search space: 819227264
effective search space used: 819227264
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 56 (26.6 bits)
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