GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001105-TA|BGIBMGA001105-PA|undefined
         (292 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF264721-1|AAF75273.1|  126|Tribolium castaneum putative cytochr...    23   2.0  
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    23   3.5  
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        21   8.2  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    21   8.2  

>AF264721-1|AAF75273.1|  126|Tribolium castaneum putative
          cytochrome P450 monooxigenaseCYP4Q2 protein.
          Length = 126

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 12/38 (31%), Positives = 20/38 (52%)

Query: 33 ERVGKDSIKNFDCCSLTLQPCRNPVVTKEGYLFDKEAI 70
          ER  K+S++ +    L  +     V T++GYL  K+ I
Sbjct: 49 ERCIKESLRLYPSVHLISRALGEDVRTQKGYLIPKDTI 86


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 9/38 (23%), Positives = 17/38 (44%)

Query: 113 KFMNREKNISSTTPSTSAIEEKTINSVSNIANGKEKQL 150
           + +  EK +    P  + +  +   +V+NI     KQL
Sbjct: 185 RIIEAEKRVECNDPLVALVVNENNTTVNNICQATHKQL 222


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 8/31 (25%), Positives = 17/31 (54%)

Query: 215 PVTHDILSNAVPCAVIRTSGHVVTMECVEKI 245
           P+TH+I  N  P   I  S +++ +  ++ +
Sbjct: 337 PLTHNIAHNPYPSHSIYPSSNLMPLNNIQNL 367


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 4/43 (9%)

Query: 173 TVYCPISGKPLKMKDLIE-VKWTLVNDPDDKKSLIAKENRYMC 214
           T +CP        KD  E V W   N  +++ + +  +N+Y C
Sbjct: 84  TCHCPYG---YTGKDCGEYVDWCSTNPCENQATCVQNKNQYQC 123


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.314    0.131    0.384 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 67,474
Number of Sequences: 317
Number of extensions: 2740
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 4
length of query: 292
length of database: 114,650
effective HSP length: 56
effective length of query: 236
effective length of database: 96,898
effective search space: 22867928
effective search space used: 22867928
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 43 (21.4 bits)