Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001105-TA|BGIBMGA001105-PA|undefined
(292 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-tran... 32 0.084
SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein Tea4|Schi... 29 0.59
SPCC4G3.16 |||CMP/dCMP deaminase family|Schizosaccharomyces pomb... 28 1.8
SPAC1D4.09c |||DUF602 family protein|Schizosaccharomyces pombe|c... 28 1.8
SPAC16A10.06c |nse2||Smc5-6 complex non-SMC subunit 2 |Schizosac... 27 3.2
SPCC24B10.19c |||sequence orphan|Schizosaccharomyces pombe|chr 3... 26 5.5
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 26 7.3
SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces ... 26 7.3
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc... 25 9.7
SPCC1322.12c |bub1||serine/threonine protein kinase Bub1|Schizos... 25 9.7
SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces... 25 9.7
SPAPB24D3.03 |||agmatinase |Schizosaccharomyces pombe|chr 1|||Ma... 25 9.7
SPCC622.14 |||GTPase activating protein |Schizosaccharomyces pom... 25 9.7
>SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 516
Score = 32.3 bits (70), Expect = 0.084
Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 13/94 (13%)
Query: 177 PISGKPLKMKDLIEVKWTLVNDPDDKKSLIAKENRYMCPVTHDILSNAVPCAVIRTSGHV 236
PI+G+ M DLI++K+ K S A+E Y PVT + IR++G+
Sbjct: 84 PINGQKASMSDLIKLKFA-------KNS--AEE--YCDPVTMKSFTRFSHIVAIRSTGNC 132
Query: 237 VTMECVEKI-IK-KDWLHPLTGEKLKEKDIILLQ 268
+ + +E++ IK K W + E+ DII +Q
Sbjct: 133 FSWDTIERLNIKPKHWRDLVNEEQFTRDDIITIQ 166
Score = 25.8 bits (54), Expect = 7.3
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
Query: 43 FDCCSLTLQPCRNPVV----TKEGYLFDKEAILEYI 74
F+ CSL+LQP +P TK+ +FD I+ ++
Sbjct: 42 FNYCSLSLQPFNHPCCLVDETKQAIIFDFRFIVPWL 77
>SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein
Tea4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 29.5 bits (63), Expect = 0.59
Identities = 18/50 (36%), Positives = 22/50 (44%)
Query: 120 NISSTTPSTSAIEEKTINSVSNIANGKEKQLPSFWVPSQLPDAKISKIEK 169
+ ST+P I E IN S A+ K P S PDA+ S I K
Sbjct: 302 SFQSTSPLGLEIVETEINGSSTTADSKNSHSPYSKFSSAYPDAENSNISK 351
>SPCC4G3.16 |||CMP/dCMP deaminase family|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 405
Score = 27.9 bits (59), Expect = 1.8
Identities = 15/60 (25%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Query: 131 IEEKTINSVSNIANGKEKQLPSFWVPSQLPDAKISKIEKPDPTVYCPISGKPLKMKDLIE 190
I EK ++SV N+ E++ + S+ DA + ++ + I KP+K+K ++
Sbjct: 3 IPEKYLSSVDNV----EEETQILFALSKQKDADLGMLDSKQEQIALTIGNKPIKVKQSLQ 58
>SPAC1D4.09c |||DUF602 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 240
Score = 27.9 bits (59), Expect = 1.8
Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 212 YMCPVTHDILSNAVPCAVIRTSGHVVTMECVEKIIKKDWLHPLTGEKLKEKDII 265
++CP+T ++S+ A I GHV +++ +K + +EKD+I
Sbjct: 103 WLCPITRHVMSDTYQFAYIVPCGHVFEYSALKQFGEKMCFQ--CNQVYEEKDVI 154
>SPAC16A10.06c |nse2||Smc5-6 complex non-SMC subunit 2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 250
Score = 27.1 bits (57), Expect = 3.2
Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 46 CSLTLQPCRNPVV-TKEGYLFDKEAILEYI 74
C LTLQP +P++ T + ++K+AIL +
Sbjct: 179 CPLTLQPIVHPILSTACNHFYEKDAILSLL 208
>SPCC24B10.19c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 455
Score = 26.2 bits (55), Expect = 5.5
Identities = 11/42 (26%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 112 IKFMNREKNISSTTPSTSAIEEKTINSVSNIANGKEKQLPSF 153
++F N+E+NI TP+++ + + ++V++I+ K + S+
Sbjct: 46 LRFANKEENICRLTPNSAFVPVRD-SAVASISTSKVQDFNSY 86
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 25.8 bits (54), Expect = 7.3
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Query: 112 IKFMNR--EKNISSTTPSTSAIEEKTINSVSNIANGKEKQLPSFWVPSQLP 160
I+ MN E N ST P+ SAI +T ++V+ I +G E VP+ +P
Sbjct: 848 IRVMNHVNELNGVSTKPA-SAITPETKSTVNQIMSGGEALAAPVAVPAPIP 897
>SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 463
Score = 25.8 bits (54), Expect = 7.3
Identities = 9/39 (23%), Positives = 20/39 (51%)
Query: 39 SIKNFDCCSLTLQPCRNPVVTKEGYLFDKEAILEYIISK 77
S +FD C ++ + + + YL D+ ++ +Y+ K
Sbjct: 216 SFSSFDTCKKHMKASHSLYIPEREYLVDEPSLFDYLAEK 254
>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1233
Score = 25.4 bits (53), Expect = 9.7
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 113 KFMNREKNISSTTPSTSAIEEKTINSVSNIANGKEK 148
K +EK I+S P +I EK + S SN+ + K
Sbjct: 293 KVRKQEKLIASKRPELISIAEKALESKSNLRKIQRK 328
>SPCC1322.12c |bub1||serine/threonine protein kinase
Bub1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1044
Score = 25.4 bits (53), Expect = 9.7
Identities = 19/82 (23%), Positives = 30/82 (36%)
Query: 67 KEAILEYIISKKNAYNRLLKKYEKQLKKDXXXXXXXXXXXXXXXXIKFMNREKNISSTTP 126
+E L++I S + N K Y D ++ + RE+ S P
Sbjct: 444 QEEHLDFIPSLTPSKNYPSKIYSPNKNLDFSHTASKAETYKNSNELENVKREQPFSELLP 503
Query: 127 STSAIEEKTINSVSNIANGKEK 148
ST E T + + AN K +
Sbjct: 504 STLQEETATGTTSTTFANAKRR 525
>SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 745
Score = 25.4 bits (53), Expect = 9.7
Identities = 14/57 (24%), Positives = 19/57 (33%)
Query: 86 KKYEKQLKKDXXXXXXXXXXXXXXXXIKFMNREKNISSTTPSTSAIEEKTINSVSNI 142
K EK K + R N + T PS+ I +K + SNI
Sbjct: 419 KPAEKDAKAERKKSGLSSSTSEESLNRHISKRSSNSNDTAPSSHIIADKNLEPTSNI 475
>SPAPB24D3.03 |||agmatinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 385
Score = 25.4 bits (53), Expect = 9.7
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 146 KEKQLPSFWVPSQLPDAKISKIEKP 170
KEKQ P + VPS + + S I +P
Sbjct: 14 KEKQSPFYAVPSNYEEVEFSSIVEP 38
>SPCC622.14 |||GTPase activating protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 309
Score = 25.4 bits (53), Expect = 9.7
Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 115 MNREKNISSTTPSTSAIEEKTINSVSNIANGKE-KQLPSFWVPSQLPD 161
++R K++SS TS+ TI SVS AN K +L S + SQ PD
Sbjct: 122 VDRPKSVSSHASVTSSSTVPTIPSVSKEANDKYFAKLGS--INSQRPD 167
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.314 0.131 0.384
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,375,232
Number of Sequences: 5004
Number of extensions: 58556
Number of successful extensions: 154
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 146
Number of HSP's gapped (non-prelim): 14
length of query: 292
length of database: 2,362,478
effective HSP length: 72
effective length of query: 220
effective length of database: 2,002,190
effective search space: 440481800
effective search space used: 440481800
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 53 (25.4 bits)
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