GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001105-TA|BGIBMGA001105-PA|undefined
         (292 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    23   4.2  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    22   5.6  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   7.4  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    21   9.7  

>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 20/83 (24%), Positives = 34/83 (40%), Gaps = 5/83 (6%)

Query: 66  DKEAILEYIISKKNAYNRLLKKYEKQLKKDXXXXXXXXXXXXXXXXIKFMNREKNISSTT 125
           +KE  LE   S K  Y+R  ++ +K  K +                     RE+  S  +
Sbjct: 258 EKEKFLEERTSHKR-YSRSREREQKSYKNEREYRKYRETSKERFRD----RRERERSKES 312

Query: 126 PSTSAIEEKTINSVSNIANGKEK 148
              S++  KTI++ +N  N  +K
Sbjct: 313 KIISSLSNKTIHNNNNYKNYNKK 335


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 9/30 (30%), Positives = 16/30 (53%)

Query: 196 VNDPDDKKSLIAKENRYMCPVTHDILSNAV 225
           +NDP+  + ++A  NR    + +D   N V
Sbjct: 372 INDPEGNEYMLALSNRMQKIINNDFNFNDV 401


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 8/27 (29%), Positives = 15/27 (55%)

Query: 260 KEKDIILLQRGGTGYALTNQNLEGKNE 286
           +E++++++ R G G    N N E   E
Sbjct: 362 EEEEVVVVGRNGAGVGAMNANGEAVGE 388


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 8/15 (53%), Positives = 10/15 (66%)

Query: 154 WVPSQLPDAKISKIE 168
           W+ SQ PDA+   IE
Sbjct: 391 WIVSQTPDAEYCVIE 405


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.314    0.131    0.384 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,796
Number of Sequences: 429
Number of extensions: 3993
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 4
length of query: 292
length of database: 140,377
effective HSP length: 57
effective length of query: 235
effective length of database: 115,924
effective search space: 27242140
effective search space used: 27242140
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 43 (21.4 bits)