Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001105-TA|BGIBMGA001105-PA|undefined
(292 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g61620.1 68414.m06943 expressed protein contains Pfam profile... 145 4e-35
At5g67530.1 68418.m08515 peptidyl-prolyl cis-trans isomerase cyc... 42 4e-04
At3g07370.1 68416.m00879 tetratricopeptide repeat (TPR)-containi... 42 6e-04
At3g62970.1 68416.m07074 zinc finger (C3HC4-type RING finger) fa... 39 0.005
At5g18650.1 68418.m02214 zinc finger (C3HC4-type RING finger) fa... 32 0.40
At3g52450.1 68416.m05768 U-box domain-containing protein similar... 32 0.40
At1g76390.1 68414.m08877 armadillo/beta-catenin repeat family pr... 32 0.40
At3g12020.1 68416.m01490 kinesin motor protein-related similar t... 31 0.69
At2g28830.1 68415.m03505 armadillo/beta-catenin repeat family pr... 31 0.91
At5g61560.1 68418.m07725 protein kinase family protein contains ... 30 1.6
At3g20010.1 68416.m02531 SNF2 domain-containing protein / helica... 30 1.6
At5g01830.1 68418.m00102 armadillo/beta-catenin repeat family pr... 30 2.1
At4g28270.1 68417.m04049 zinc finger (C3HC4-type RING finger) fa... 30 2.1
At3g11840.1 68416.m01451 U-box domain-containing protein low sim... 29 2.8
At2g35930.1 68415.m04410 U-box domain-containing protein similar... 29 2.8
At1g64180.1 68414.m07270 intracellular protein transport protein... 29 4.9
At5g38140.1 68418.m04596 histone-like transcription factor (CBF/... 28 6.4
At5g61550.1 68418.m07724 protein kinase family protein contains ... 28 8.5
At5g60150.1 68418.m07540 expressed protein ; expression supporte... 28 8.5
At5g50480.1 68418.m06252 CCAAT-box binding transcription factor ... 28 8.5
At3g43390.1 68416.m04592 hypothetical protein similar to At3g243... 28 8.5
At1g67510.1 68414.m07690 leucine-rich repeat family protein cont... 28 8.5
>At1g61620.1 68414.m06943 expressed protein contains Pfam profile:
PF01363 FYVE zinc finger
Length = 310
Score = 145 bits (351), Expect = 4e-35
Identities = 87/293 (29%), Positives = 151/293 (51%), Gaps = 16/293 (5%)
Query: 3 RHARNCTAGAVYTYHEKKKDAAASGYGTQSERVGKDSIKNFDCCSLTLQPCRNPVVTKEG 62
RH++N A +TY EKKK GYGTQ ER+G+DSIK FD CSL L+P +P+ +G
Sbjct: 4 RHSKNNNDLAYFTYDEKKK----LGYGTQRERLGRDSIKPFDACSLCLKPFIDPMCCHKG 59
Query: 63 YLFDKEAILEYIISKKNAYNRLLKKYEKQLKKDXXXXXXXXXXXXXXXXIKFMNREKNIS 122
++F +E ILE +++K R L + Q K+D +F + +
Sbjct: 60 HVFCRECILECFLAQKKDIQRRLAAHSSQKKQDKDEEEERLMLQKARELDEFDQQNHSAM 119
Query: 123 STTPSTSAIEEKT----INSVSNIANGKE--KQLPSFWVPSQLPDAKISKIEKPDPTVYC 176
+ E+K NSV + +E + + +FW+PS P A + +++ P+ C
Sbjct: 120 PRNSDKNHNEDKNGFHGANSVKTTSFEEEALRTMKAFWLPSATPAASV-RVDAPETHTVC 178
Query: 177 PISGKPLKMKDLIEVKWTLVNDPDDK-----KSLIAKENRYMCPVTHDILSNAVPCAVIR 231
P + LK+K+L +++T N +++ S + + Y+CP L+N + +
Sbjct: 179 PEGKEKLKLKNLFAIRFTEDNSEEEETKTKSASSSSYDKSYICPSCKVTLTNTMSLVALS 238
Query: 232 TSGHVVTMECVEKIIKKDWLHPLTGEKLKEKDIILLQRGGTGYALTNQNLEGK 284
+ GHV +C EK + D + + + K+++++ L++GGTG+A + +LE K
Sbjct: 239 SCGHVFCKKCAEKFMPVDKVCLVCDKPCKDRNLVGLKKGGTGFAEHDDHLEAK 291
>At5g67530.1 68418.m08515 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein contains Pfam domain,
PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type
Length = 595
Score = 42.3 bits (95), Expect = 4e-04
Identities = 29/94 (30%), Positives = 48/94 (51%), Gaps = 13/94 (13%)
Query: 177 PISGKPLKMKDLIEVKWTLVNDPDDKKSLIAKENRYMCPVTHDILSNAVPCAVIRTSGHV 236
P++G PLK +DLI + + K S E Y CPV + + + ++T+G+V
Sbjct: 77 PVTGAPLKGEDLIPLIF-------HKNS----EGEYHCPVLNKVFTEFTHIVAVKTTGNV 125
Query: 237 VTMECVEKI-IK-KDWLHPLTGEKLKEKDIILLQ 268
E ++++ IK K+W LT E D+I +Q
Sbjct: 126 FCYEAIKELNIKTKNWKELLTEEPFTRADLITIQ 159
Score = 32.7 bits (71), Expect = 0.30
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 25 ASGYGTQSERVGKDSIKN--FDCCSLTLQPCRNPVVTKEGYLFDKEAILEYI 74
A+ +G + + K+ + CC+LT P +PV T +G +F+ I+ YI
Sbjct: 19 ATEWGGAKSKENRTPFKSLPYYCCALTFLPFEDPVCTIDGSVFEITTIVPYI 70
Score = 28.3 bits (60), Expect = 6.4
Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 12/79 (15%)
Query: 212 YMCPVTHDILSNAVPCAVIRTSGHVVTMECVEKIIKKDWLHPLTGEKLKEKDIILLQRGG 271
Y C +T + V C + G V + + I+K HP+TG LK +D+I L
Sbjct: 40 YCCALTFLPFEDPV-CTI---DGSVFEITTIVPYIRKFGKHPVTGAPLKGEDLIPL---- 91
Query: 272 TGYALTNQNLEGKNERPVL 290
+ ++N EG+ PVL
Sbjct: 92 ----IFHKNSEGEYHCPVL 106
>At3g07370.1 68416.m00879 tetratricopeptide repeat (TPR)-containing
protein / U-box domain-containing protein similar to
serologically defined colon cancer antigen 7 GB:5031963
GI:3170178 [Homo sapiens];
Length = 278
Score = 41.5 bits (93), Expect = 6e-04
Identities = 17/61 (27%), Positives = 35/61 (57%)
Query: 14 YTYHEKKKDAAASGYGTQSERVGKDSIKNFDCCSLTLQPCRNPVVTKEGYLFDKEAILEY 73
YT H ++ A + +E + ++ CC++TL+ R+PV++ G +++ AILE+
Sbjct: 174 YTAHTERLKALERVFKKAAEEDKPTEVPDYLCCNITLEIFRDPVISPSGVTYERAAILEH 233
Query: 74 I 74
+
Sbjct: 234 L 234
>At3g62970.1 68416.m07074 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 276
Score = 38.7 bits (86), Expect = 0.005
Identities = 16/49 (32%), Positives = 28/49 (57%)
Query: 201 DKKSLIAKENRYMCPVTHDILSNAVPCAVIRTSGHVVTMECVEKIIKKD 249
DK S I + CPV ++ L ++V A + GH + M+C E++I ++
Sbjct: 146 DKHSCIENSTKNSCPVCYEYLFDSVKAAHVMKCGHTMHMDCFEQMINEN 194
>At5g18650.1 68418.m02214 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 267
Score = 32.3 bits (70), Expect = 0.40
Identities = 11/39 (28%), Positives = 24/39 (61%)
Query: 211 RYMCPVTHDILSNAVPCAVIRTSGHVVTMECVEKIIKKD 249
R+ CP+ ++ L +++ + GH + +EC ++IK+D
Sbjct: 150 RHHCPICYEYLFDSLKDTNVMKCGHTMHVECYNEMIKRD 188
>At3g52450.1 68416.m05768 U-box domain-containing protein similar
to immediate-early fungal elicitor protein CMPG1
[Petroselinum crispum] GI:14582200; contains Pfam
profile PF04564: U-box domain
Length = 435
Score = 32.3 bits (70), Expect = 0.40
Identities = 14/42 (33%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 40 IKNFDCCSLTLQPCRNPVVTKEGYLFDKEAILEYIIS-KKNA 80
I +F C ++L ++PV+ G +D+E+I +++ S KKN+
Sbjct: 7 IPSFFLCPISLDIMKDPVIVSTGITYDRESIEKWLFSGKKNS 48
>At1g76390.1 68414.m08877 armadillo/beta-catenin repeat family
protein / U-box domain-containing protein contains Pfam
domain, PF00514: Armadillo/beta-catenin-like repeats
and Pfam, PF04564: U-box domain
Length = 811
Score = 32.3 bits (70), Expect = 0.40
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 22 DAAASGYGTQSERVGKDSIKNFDCCSLTLQPCRNPVVTKEGYLFDKEAI 70
D + S +Q E G D+I C LT Q NPV + G F++EAI
Sbjct: 8 DGSQSDNSSQFEP-GIDNIYEAFICPLTKQVMHNPVTLENGQTFEREAI 55
>At3g12020.1 68416.m01490 kinesin motor protein-related similar to
putative kinesin heavy chain GB:AAD23684 GI:4567271 from
[Arabidopsis thaliana]
Length = 1030
Score = 31.5 bits (68), Expect = 0.69
Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
Query: 118 EKNISSTTPSTSAIEEKTINSVSNIANGKEKQLPSFWVPSQLPDAKISKIEKPDPTV-YC 176
+ SSTT S+ +E +I+ S+ A+ + F+ P LP E TV +
Sbjct: 18 DSTASSTTSSSKLYQETSIDGHSSPASSSAQSKQQFFSPDPLPQTAQRSKENVTVTVRFR 77
Query: 177 PISGKPLKMKDLIEVKW 193
P+S + ++ + EV W
Sbjct: 78 PLSPREIRQGE--EVAW 92
>At2g28830.1 68415.m03505 armadillo/beta-catenin repeat family
protein / U-box domain-containing protein contains Pfam
domain, PF00514: Armadillo/beta-catenin-like repeats and
Pfam, PF04564: U-box domain
Length = 654
Score = 31.1 bits (67), Expect = 0.91
Identities = 18/72 (25%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Query: 189 IEVKWTLVNDPDDKKSLIAKENRYMCPVTHDILSNAVPCAVIRTSGHVVTMECVEKIIKK 248
+ +K +L DD + ++ + CP++ +++++ VI +SG EC++K ++
Sbjct: 237 LRLKSSLPKSRDDDRDMLIPPEEFRCPISLELMTD----PVIVSSGQTYERECIKKWLEG 292
Query: 249 DWLH-PLTGEKL 259
L P T E L
Sbjct: 293 GHLTCPKTQETL 304
>At5g61560.1 68418.m07725 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 796
Score = 30.3 bits (65), Expect = 1.6
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 46 CSLTLQPCRNPVVTKEGYLFDKEAILEYI 74
C +T NP V +GY ++K AI E++
Sbjct: 731 CPITKDVMENPCVASDGYTYEKRAIKEWL 759
Score = 28.3 bits (60), Expect = 6.4
Identities = 11/44 (25%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
Query: 212 YMCPVTHDILSNAVPCAVIRTSGHVVTMECVEKIIKKDWLHPLT 255
+ CP+T D++ N PC + + G+ +++ ++K+ P+T
Sbjct: 729 FYCPITKDVMEN--PC--VASDGYTYEKRAIKEWLQKNHKSPMT 768
>At3g20010.1 68416.m02531 SNF2 domain-containing protein / helicase
domain-containing protein / RING finger
domain-containing protein similar to transcription
factor RUSH-1alpha [Oryctolagus cuniculus] GI:1655930;
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 1047
Score = 30.3 bits (65), Expect = 1.6
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 51 QPCRNPVVTKEGYLFDKEAILEYIISKKNAYNRLLKKYEKQLKKD 95
+P PVVT G++F E +LEYI +N + + ++QL +D
Sbjct: 756 EPPEKPVVTLCGHIFCYECVLEYITGDENTCP--VPRCKQQLARD 798
>At5g01830.1 68418.m00102 armadillo/beta-catenin repeat family
protein / U-box domain-containing protein contains Pfam
domain, PF00514: Armadillo/beta-catenin-like repeats and
Pfam, PF04564: U-box domain
Length = 674
Score = 29.9 bits (64), Expect = 2.1
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 46 CSLTLQPCRNPVVTKEGYLFDKEAILEYIISKKN 79
C +TL+ R+PVV G +D+E+I +I S N
Sbjct: 280 CPITLELMRDPVVVATGQTYDRESIDLWIQSGHN 313
>At4g28270.1 68417.m04049 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 193
Score = 29.9 bits (64), Expect = 2.1
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 38 DSIKNFDCCSLTLQPCRNPVVTKEGYLFDKEAILEYIISKKNAYNRL 84
DS +FDC ++ L R+PVVT G+LF I ++ + N+ R+
Sbjct: 14 DSGGDFDC-NICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRV 59
>At3g11840.1 68416.m01451 U-box domain-containing protein low
similarity to immediate-early fungal elicitor protein
CMPG1 [Petroselinum crispum] GI:14582200; contains Pfam
profile PF04564: U-box domain
Length = 470
Score = 29.5 bits (63), Expect = 2.8
Identities = 10/35 (28%), Positives = 23/35 (65%)
Query: 40 IKNFDCCSLTLQPCRNPVVTKEGYLFDKEAILEYI 74
I N+ C ++L+ ++PV T G +D++ I++++
Sbjct: 24 IPNYFICPISLEIMKDPVTTVSGITYDRQNIVKWL 58
>At2g35930.1 68415.m04410 U-box domain-containing protein similar
to immediate-early fungal elicitor protein CMPG1
[Petroselinum crispum] GI:14582200; contains Pfam
profile PF04564: U-box domain
Length = 411
Score = 29.5 bits (63), Expect = 2.8
Identities = 12/42 (28%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 40 IKNFDCCSLTLQPCRNPVVTKEGYLFDKEAILEYIIS-KKNA 80
I F C ++L+ ++PV+ G +D+++I +++ + KKN+
Sbjct: 12 IPPFFLCPISLEIMKDPVIVSTGITYDRDSIEKWLFAGKKNS 53
>At1g64180.1 68414.m07270 intracellular protein transport protein
USO1-related similar to Rap8 (GI:2326183) [Rhynchosciara
americana]; contains weak similarity to
Swiss-Prot:P25386 intracellular protein transport
protein USO1 [Saccharomyces cerevisiae]
Length = 593
Score = 28.7 bits (61), Expect = 4.9
Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 6/88 (6%)
Query: 140 SNIANGKE--KQLPSFWVPSQLPDAKISKIEKPDPTVYCPISGKPLKMKDLIEVKWTLVN 197
+NI E K L W+ + A IS I+ ++ ++ ++KDL+ K
Sbjct: 183 NNIKTSTELLKVLNRIWILEEQHSANISLIK----SLKTELAHSRARIKDLLRCKQADKR 238
Query: 198 DPDDKKSLIAKENRYMCPVTHDILSNAV 225
D DD +A+E HD LS+AV
Sbjct: 239 DMDDFVKQLAEEKLSKGTKEHDRLSSAV 266
>At5g38140.1 68418.m04596 histone-like transcription factor
(CBF/NF-Y) family protein similar to CCAAT-binding
transcription factor subunit AAB-1 (GI:2583171)
[Neurospora crassa]; contains a CBF/NF-Y subunit
signature (PDOC00578) presernt in members of
histone-like transcription factor family; contains Pfam
PF00808 : Histone-like transcription factor (CBF/NF-Y)
and archaeal histone
Length = 195
Score = 28.3 bits (60), Expect = 6.4
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 123 STTPSTSAIEE-KTINSVSNIA-NGKEKQLPSFWVPSQLPDAKISKIEKPDPTV 174
S P TS IE ++++ + N + +QL +F + LP +++ KI K DP V
Sbjct: 30 SNHPETSKIEGVSSLDTALKVFWNNQREQLGNFAGQTHLPLSRVRKILKSDPEV 83
>At5g61550.1 68418.m07724 protein kinase family protein contains
Pfam profile: PF00069 Eukaryotic protein kinase domain;
protein kinase 1, PnPK1, Populus nigra, EMBL:AB041503
Length = 845
Score = 27.9 bits (59), Expect = 8.5
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 46 CSLTLQPCRNPVVTKEGYLFDKEAILEYIISK 77
C L P V +GY +D+EAI E++ K
Sbjct: 781 CPLLKGVMNEPCVAADGYTYDREAIEEWLRQK 812
>At5g60150.1 68418.m07540 expressed protein ; expression supported
by MPSS
Length = 1195
Score = 27.9 bits (59), Expect = 8.5
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 123 STTPSTSAIEEKTINSVSNIANGKEKQLPSFWVPSQLPDAKISKIEKPDP 172
+ +P A+EE N + + +EK+L S +P +L +K+ K DP
Sbjct: 164 NVSPGLQALEENLFNDLPVNSKNREKKLVSGIMPKELSISKV-PTTKSDP 212
>At5g50480.1 68418.m06252 CCAAT-box binding transcription factor
Hap5a, putative GI:14577940 CCAAT-binding protein
subunit HAP5 {Hypocrea jecorina} similar to
Transcription factor GB:CAA74053 GI:2398533 from
[Arabidopsis thaliana] similarity to transcription
factor Hap5a similar to transcription factor Hap5a
[Arabidopsis thaliana](GI:6523090)
Length = 202
Score = 27.9 bits (59), Expect = 8.5
Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Query: 158 QLPDAKISKIEKPDPTVYCPISGKPLKMKDLIEVKWTLVNDPDDKKSLIAKENRYMCPVT 217
QLP A+I KI K DP V+ + P+ E+ + D + L A+EN+
Sbjct: 54 QLPLARIKKIMKADPDVHMVSAEAPIIFAKACEM---FIVDLTMRSWLKAEENKRHTLQK 110
Query: 218 HDILSNAV 225
DI SNAV
Sbjct: 111 SDI-SNAV 117
>At3g43390.1 68416.m04592 hypothetical protein similar to At3g24380,
At5g36840, At5g35010, At3g42740, At4g05290, At2g14770,
At2g05560, At4g08880, At1g34730, At1g27790, At1g34740,
At1g27780, At5g36850, At3g42730, At1g52020, At3g24390,
At4g05280, At1g25886, At4g03300
Length = 1113
Score = 27.9 bits (59), Expect = 8.5
Identities = 14/27 (51%), Positives = 16/27 (59%)
Query: 123 STTPSTSAIEEKTINSVSNIANGKEKQ 149
S PSTSA EE S S +ANG E +
Sbjct: 724 SGLPSTSAQEEARDASASTVANGSESE 750
>At1g67510.1 68414.m07690 leucine-rich repeat family protein
contains protein kinase domain, Pfam:PF00069; contains
leucine-rich repeats, Pfam:PF00560
Length = 719
Score = 27.9 bits (59), Expect = 8.5
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 13 VYTYHEKKKDAAASGYGTQSERVGKDSIKNFDCCSLT 49
VY Y KKKD+ T + ++G S+K CC +T
Sbjct: 335 VYLYW-KKKDSEGGCSCTGNAKLGGGSVKGKSCCCIT 370
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.314 0.131 0.384
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,009,398
Number of Sequences: 28952
Number of extensions: 297694
Number of successful extensions: 662
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 637
Number of HSP's gapped (non-prelim): 27
length of query: 292
length of database: 12,070,560
effective HSP length: 80
effective length of query: 212
effective length of database: 9,754,400
effective search space: 2067932800
effective search space used: 2067932800
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 59 (27.9 bits)
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