Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001104-TA|BGIBMGA001104-PA|undefined
         (56 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    21   1.3  
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    20   1.7  
AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein p...    20   1.7  
AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein p...    20   1.7  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    19   3.0  
AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory recept...    19   5.2  

>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 20.6 bits (41), Expect = 1.3
 Identities = 8/28 (28%), Positives = 13/28 (46%)

Query: 6   VPPEPERASESAKQAIERHNRLKRWLVT 33
           +PP  +     A   +ERH   K W+ +
Sbjct: 220 LPPVWQGGESEALARLERHLERKAWVAS 247


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 20.2 bits (40), Expect = 1.7
 Identities = 9/20 (45%), Positives = 12/20 (60%)

Query: 1   MKKCHVPPEPERASESAKQA 20
           MK+  +PPEP  AS S   +
Sbjct: 312 MKEGLIPPEPISASLSTSNS 331


>AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 20.2 bits (40), Expect = 1.7
 Identities = 9/20 (45%), Positives = 12/20 (60%)

Query: 1   MKKCHVPPEPERASESAKQA 20
           MK+  +PPEP  AS S   +
Sbjct: 101 MKEGLIPPEPISASLSTSNS 120


>AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 20.2 bits (40), Expect = 1.7
 Identities = 9/20 (45%), Positives = 12/20 (60%)

Query: 1   MKKCHVPPEPERASESAKQA 20
           MK+  +PPEP  AS S   +
Sbjct: 101 MKEGLIPPEPISASLSTSNS 120


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 19.4 bits (38), Expect = 3.0
 Identities = 9/21 (42%), Positives = 10/21 (47%)

Query: 2   KKCHVPPEPERASESAKQAIE 22
           K   +PPEPE   E     IE
Sbjct: 214 KTTEIPPEPEDYVEDLVGHIE 234


>AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory receptor
           candidate 41 protein.
          Length = 398

 Score = 18.6 bits (36), Expect = 5.2
 Identities = 9/29 (31%), Positives = 17/29 (58%)

Query: 12  RASESAKQAIERHNRLKRWLVTHLYLFPR 40
           +A  SA   I+R   +   L+++L +FP+
Sbjct: 308 KACMSASNLIQRTPNICYKLLSNLGIFPK 336


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.316    0.125    0.372 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,742
Number of Sequences: 317
Number of extensions: 277
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 56
length of database: 114,650
effective HSP length: 36
effective length of query: 20
effective length of database: 103,238
effective search space:  2064760
effective search space used:  2064760
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 34 (18.5 bits)
S2: 34 (17.8 bits)