Silkworm BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001104-TA|BGIBMGA001104-PA|undefined
         (56 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC114567-1|AAI14568.1| 1132|Homo sapiens nuclear protein in test...    29   3.1  
BC114518-1|AAI14519.1| 1132|Homo sapiens nuclear protein in test...    29   3.1  
BC033392-1|AAH33392.2|  613|Homo sapiens NUT protein protein.          29   3.1  
AY166680-1|AAO22237.1| 1846|Homo sapiens BRD4-NUT fusion oncopro...    29   3.1  
AF482429-1|AAO39268.1| 1132|Homo sapiens testis nuclear protein ...    29   3.1  
DQ300264-1|ABC17785.1|  593|Homo sapiens matrix metalloproteinas...    28   4.1  
AY444560-1|AAS68536.1|  281|Homo sapiens putative phytoene synth...    28   4.1  
Y00839-2|CAA68764.1|  749|Homo sapiens 70 kD alpha-glucosidase p...    27   9.4  
Y00839-1|CAA68763.1|  952|Homo sapiens glucan 1, 4-alpha-glucosi...    27   9.4  
X55080-1|CAC12967.1|  952|Homo sapiens acid alpha-glucosidase pr...    27   9.4  
M34424-1|AAA52506.1|  952|Homo sapiens GAA protein.                    27   9.4  
D31888-1|BAA06686.1|  396|Homo sapiens KIAA0071 protein.               27   9.4  
DQ907243-1|ABI53718.1|  952|Homo sapiens alpha-glucosidase protein.    27   9.4  
BC040431-1|AAH40431.1|  952|Homo sapiens glucosidase, alpha; aci...    27   9.4  
AF155595-1|AAF01498.1|  482|Homo sapiens CoREST protein protein.       27   9.4  

>BC114567-1|AAI14568.1| 1132|Homo sapiens nuclear protein in testis
           protein.
          Length = 1132

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)

Query: 2   KKCHVPPEPERASESAKQAIERHNRLKRWLV-THL 35
           +K   PP PE   E   +A++ +  +  WLV THL
Sbjct: 349 RKAQRPPAPEAPKEIPPEAVKEYVDIMEWLVGTHL 383


>BC114518-1|AAI14519.1| 1132|Homo sapiens nuclear protein in testis
           protein.
          Length = 1132

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)

Query: 2   KKCHVPPEPERASESAKQAIERHNRLKRWLV-THL 35
           +K   PP PE   E   +A++ +  +  WLV THL
Sbjct: 349 RKAQRPPAPEAPKEIPPEAVKEYVDIMEWLVGTHL 383


>BC033392-1|AAH33392.2|  613|Homo sapiens NUT protein protein.
          Length = 613

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)

Query: 2   KKCHVPPEPERASESAKQAIERHNRLKRWLV-THL 35
           +K   PP PE   E   +A++ +  +  WLV THL
Sbjct: 349 RKAQRPPAPEAPKEIPPEAVKEYVDIMEWLVGTHL 383


>AY166680-1|AAO22237.1| 1846|Homo sapiens BRD4-NUT fusion oncoprotein
            protein.
          Length = 1846

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)

Query: 2    KKCHVPPEPERASESAKQAIERHNRLKRWLV-THL 35
            +K   PP PE   E   +A++ +  +  WLV THL
Sbjct: 1063 RKAQRPPAPEAPKEIPPEAVKEYVDIMEWLVGTHL 1097


>AF482429-1|AAO39268.1| 1132|Homo sapiens testis nuclear protein
           protein.
          Length = 1132

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)

Query: 2   KKCHVPPEPERASESAKQAIERHNRLKRWLV-THL 35
           +K   PP PE   E   +A++ +  +  WLV THL
Sbjct: 349 RKAQRPPAPEAPKEIPPEAVKEYVDIMEWLVGTHL 383


>DQ300264-1|ABC17785.1|  593|Homo sapiens matrix metalloproteinase
          24 variant protein.
          Length = 593

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 1/43 (2%)

Query: 8  PEPERASESAKQAIERHNRLKRWLVTHLYLFPRDVRASSSNSS 50
          P P RA   A +A E     + WL ++ YL P D RAS+ +S+
Sbjct: 11 PGPRRAVARADEA-EAPFAGQNWLKSYGYLLPYDSRASALHSA 52


>AY444560-1|AAS68536.1|  281|Homo sapiens putative phytoene synthase
           protein.
          Length = 281

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 1/29 (3%)

Query: 4   CHVPPEPERASESAKQAIERHNRLKRWLV 32
           C  PP    A E  K A++RHN  KRWL+
Sbjct: 74  CDNPPHQPVAIELWK-AVKRHNLTKRWLM 101


>Y00839-2|CAA68764.1|  749|Homo sapiens 70 kD alpha-glucosidase
           protein.
          Length = 749

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 13/31 (41%), Positives = 19/31 (61%)

Query: 6   VPPEPERASESAKQAIERHNRLKRWLVTHLY 36
           +P EP   SE A+QA+ +   L+  L+ HLY
Sbjct: 477 LPQEPYSFSEPAQQAMRKALTLRYALLPHLY 507


>Y00839-1|CAA68763.1|  952|Homo sapiens glucan 1,
           4-alpha-glucosidase protein.
          Length = 952

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 13/31 (41%), Positives = 19/31 (61%)

Query: 6   VPPEPERASESAKQAIERHNRLKRWLVTHLY 36
           +P EP   SE A+QA+ +   L+  L+ HLY
Sbjct: 680 LPQEPYSFSEPAQQAMRKALTLRYALLPHLY 710


>X55080-1|CAC12967.1|  952|Homo sapiens acid alpha-glucosidase
           protein.
          Length = 952

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 13/31 (41%), Positives = 19/31 (61%)

Query: 6   VPPEPERASESAKQAIERHNRLKRWLVTHLY 36
           +P EP   SE A+QA+ +   L+  L+ HLY
Sbjct: 680 LPQEPYSFSEPAQQAMRKALTLRYALLPHLY 710


>M34424-1|AAA52506.1|  952|Homo sapiens GAA protein.
          Length = 952

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 13/31 (41%), Positives = 19/31 (61%)

Query: 6   VPPEPERASESAKQAIERHNRLKRWLVTHLY 36
           +P EP   SE A+QA+ +   L+  L+ HLY
Sbjct: 680 LPQEPYSFSEPAQQAMRKALTLRYALLPHLY 710


>D31888-1|BAA06686.1|  396|Homo sapiens KIAA0071 protein.
          Length = 396

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 1/54 (1%)

Query: 3   KCHVPP-EPERASESAKQAIERHNRLKRWLVTHLYLFPRDVRASSSNSSATDVI 55
           K  VPP E     +  K + +  NR KR     ++L   DV A S+N++A   +
Sbjct: 195 KKEVPPTETVPQVKKEKHSTQAKNRAKRKPPKGMFLSQEDVEAVSANATAATTV 248


>DQ907243-1|ABI53718.1|  952|Homo sapiens alpha-glucosidase protein.
          Length = 952

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 13/31 (41%), Positives = 19/31 (61%)

Query: 6   VPPEPERASESAKQAIERHNRLKRWLVTHLY 36
           +P EP   SE A+QA+ +   L+  L+ HLY
Sbjct: 680 LPQEPYSFSEPAQQAMRKALTLRYALLPHLY 710


>BC040431-1|AAH40431.1|  952|Homo sapiens glucosidase, alpha; acid
           (Pompe disease, glycogen storage disease type II)
           protein.
          Length = 952

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 13/31 (41%), Positives = 19/31 (61%)

Query: 6   VPPEPERASESAKQAIERHNRLKRWLVTHLY 36
           +P EP   SE A+QA+ +   L+  L+ HLY
Sbjct: 680 LPQEPYSFSEPAQQAMRKALTLRYALLPHLY 710


>AF155595-1|AAF01498.1|  482|Homo sapiens CoREST protein protein.
          Length = 482

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 1/54 (1%)

Query: 3   KCHVPP-EPERASESAKQAIERHNRLKRWLVTHLYLFPRDVRASSSNSSATDVI 55
           K  VPP E     +  K + +  NR KR     ++L   DV A S+N++A   +
Sbjct: 281 KKEVPPTETVPQVKKEKHSTQAKNRAKRKPPKGMFLSQEDVEAVSANATAATTV 334


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.316    0.125    0.372 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,318,916
Number of Sequences: 224733
Number of extensions: 218596
Number of successful extensions: 653
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 646
Number of HSP's gapped (non-prelim): 16
length of query: 56
length of database: 73,234,838
effective HSP length: 36
effective length of query: 20
effective length of database: 65,144,450
effective search space: 1302889000
effective search space used: 1302889000
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 57 (27.1 bits)