Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001104-TA|BGIBMGA001104-PA|undefined
         (56 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    22   0.51 
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    21   1.6  
AF213011-1|AAG43567.1|   62|Apis mellifera esterase A2 protein.        20   2.7  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    19   3.6  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     19   4.8  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    18   8.3  

>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 22.2 bits (45), Expect = 0.51
 Identities = 9/27 (33%), Positives = 18/27 (66%)

Query: 11  ERASESAKQAIERHNRLKRWLVTHLYL 37
           +RA+ES  +  ++  +LK+ +  HLY+
Sbjct: 341 DRAAESILEPAKKGFKLKQGIQFHLYI 367


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein
          protein.
          Length = 471

 Score = 20.6 bits (41), Expect = 1.6
 Identities = 8/18 (44%), Positives = 13/18 (72%)

Query: 25 NRLKRWLVTHLYLFPRDV 42
          NR  R++ T+L+L  +DV
Sbjct: 41 NRTGRYMFTYLHLLYQDV 58


>AF213011-1|AAG43567.1|   62|Apis mellifera esterase A2 protein.
          Length = 62

 Score = 19.8 bits (39), Expect = 2.7
 Identities = 8/13 (61%), Positives = 9/13 (69%)

Query: 36 YLFPRDVRASSSN 48
          YL P+DV   SSN
Sbjct: 43 YLLPKDVVVVSSN 55


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 19.4 bits (38), Expect = 3.6
 Identities = 5/12 (41%), Positives = 7/12 (58%)

Query: 28  KRWLVTHLYLFP 39
           + W +TH Y  P
Sbjct: 226 RSWRITHSYFMP 237


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 19.0 bits (37), Expect = 4.8
 Identities = 8/28 (28%), Positives = 12/28 (42%)

Query: 6   VPPEPERASESAKQAIERHNRLKRWLVT 33
           +PP        A   +ERH   K W+ +
Sbjct: 224 LPPVWVGGESEALARLERHLERKAWVAS 251


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 18.2 bits (35), Expect = 8.3
 Identities = 5/9 (55%), Positives = 8/9 (88%)

Query: 7   PPEPERASE 15
           PP+P+R S+
Sbjct: 253 PPQPDRTSK 261


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.316    0.125    0.372 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,908
Number of Sequences: 429
Number of extensions: 426
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 56
length of database: 140,377
effective HSP length: 36
effective length of query: 20
effective length of database: 124,933
effective search space:  2498660
effective search space used:  2498660
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)
S2: 35 (18.2 bits)