Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001104-TA|BGIBMGA001104-PA|undefined
         (56 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g22240.1 68417.m03218 plastid-lipid associated protein PAP, p...    29   0.28 
At1g52410.2 68414.m05915 caldesmon-related weak similarity to Ca...    29   0.49 
At1g52410.1 68414.m05914 caldesmon-related weak similarity to Ca...    29   0.49 
At4g18210.1 68417.m02706 purine permease family protein similar ...    27   2.0  
At4g32860.1 68417.m04677 expressed protein                             26   3.5  
At1g50090.1 68414.m05619 aminotransferase class IV family protei...    26   3.5  
At1g14080.1 68414.m01666 xyloglucan fucosyltransferase, putative...    26   3.5  
At3g10180.1 68416.m01219 kinesin motor protein-related similar t...    25   6.1  
At1g72600.1 68414.m08395 hydroxyproline-rich glycoprotein family...    25   6.1  
At5g36170.2 68418.m04359 peptide chain release factor, putative ...    25   8.0  
At4g14950.3 68417.m02297 expressed protein                             25   8.0  
At4g14950.2 68417.m02295 expressed protein                             25   8.0  
At4g14950.1 68417.m02296 expressed protein                             25   8.0  

>At4g22240.1 68417.m03218 plastid-lipid associated protein PAP,
           putative similar to plastid-lipid associated proteins
           PAP2 [Brassica rapa] GI:14248550 GI:14248556; contains
           Pfam profile PF04755: PAP_fibrillin
          Length = 310

 Score = 29.5 bits (63), Expect = 0.28
 Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 1/45 (2%)

Query: 13  ASESAKQAIERHNRLKRWLVTHLYLFPRDVRASS-SNSSATDVIT 56
           A+E A + +E   RLKR LV  LY   R + ASS + +   D+IT
Sbjct: 72  AAEEAIEDVEETERLKRSLVDSLYGTDRGLSASSETRAEIGDLIT 116


>At1g52410.2 68414.m05915 caldesmon-related weak similarity to
           Caldesmon (CDM) (Swiss-Prot:P12957) [Gallus gallus]
          Length = 759

 Score = 28.7 bits (61), Expect = 0.49
 Identities = 15/44 (34%), Positives = 22/44 (50%)

Query: 9   EPERASESAKQAIERHNRLKRWLVTHLYLFPRDVRASSSNSSAT 52
           E    + S  Q +E H + K  L+ H  L    + +S+S SSAT
Sbjct: 528 ETSSLTASLTQLVENHRKEKESLLGHRVLTSPSIASSTSESSAT 571


>At1g52410.1 68414.m05914 caldesmon-related weak similarity to
           Caldesmon (CDM) (Swiss-Prot:P12957) [Gallus gallus]
          Length = 755

 Score = 28.7 bits (61), Expect = 0.49
 Identities = 15/44 (34%), Positives = 22/44 (50%)

Query: 9   EPERASESAKQAIERHNRLKRWLVTHLYLFPRDVRASSSNSSAT 52
           E    + S  Q +E H + K  L+ H  L    + +S+S SSAT
Sbjct: 524 ETSSLTASLTQLVENHRKEKESLLGHRVLTSPSIASSTSESSAT 567


>At4g18210.1 68417.m02706 purine permease family protein similar
          to purine permease [Arabidopsis thaliana] GI:7620007,
          contains Pfam profile PF03151: Domain of unknown
          function, DUF250
          Length = 390

 Score = 26.6 bits (56), Expect = 2.0
 Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 1/31 (3%)

Query: 9  EPERASESAKQAIERH-NRLKRWLVTHLYLF 38
          + ER S S+ QA   H N  KRWL   LY F
Sbjct: 22 QDERNSVSSSQAEVSHSNTYKRWLRVTLYTF 52


>At4g32860.1 68417.m04677 expressed protein
          Length = 193

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 4/32 (12%)

Query: 1   MKKCHVPPEPERASESAKQAIERHNRLKRWLV 32
           M+ CHV    +RA+E   Q+  R  RL++W++
Sbjct: 162 MESCHV----DRAAEEFIQSFYRQLRLQKWMM 189


>At1g50090.1 68414.m05619 aminotransferase class IV family protein
           contains Pfam profile: PF01063 aminotransferase class IV
          Length = 367

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 9/23 (39%), Positives = 14/23 (60%)

Query: 4   CHVPPEPERASESAKQAIERHNR 26
           C  PP PE+  E+ KQ +  +N+
Sbjct: 110 CMTPPSPEQFVEAVKQTVLANNK 132


>At1g14080.1 68414.m01666 xyloglucan fucosyltransferase, putative
           (FUT6) nearly identical to SP|Q9XI80 Probable
           fucosyltransferase 6 (EC 2.4.1.-) (AtFUT6) {Arabidopsis
           thaliana}; similar to xyloglucan fucosyltransferase
           GI:5231145 from (Arabidopsis thaliana)
          Length = 519

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 15/29 (51%), Positives = 16/29 (55%), Gaps = 1/29 (3%)

Query: 8   PEPERASESAKQAIERHNRLKRWLVTHLY 36
           PEP  A E  K  I R  +LK  LVT LY
Sbjct: 349 PEPA-AQEEPKVNISRSQKLKAVLVTSLY 376


>At3g10180.1 68416.m01219 kinesin motor protein-related similar to
           centromere protein E GB:4502781 [Homo sapiens]
          Length = 1348

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 12/45 (26%), Positives = 23/45 (51%)

Query: 9   EPERASESAKQAIERHNRLKRWLVTHLYLFPRDVRASSSNSSATD 53
           E ++   S K   E H   +  L++H+    +D+ + SS+S A +
Sbjct: 774 EAQKHETSLKMLSEHHESERSDLLSHIECLEKDIGSLSSSSLAKE 818


>At1g72600.1 68414.m08395 hydroxyproline-rich glycoprotein family
          protein contains proline-rich extensin domains,
          INTERPRO:IPR002965
          Length = 135

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 1/25 (4%)

Query: 7  PPEPERASESAKQAIER-HNRLKRW 30
          PP P  A ES K   E+ H+R K+W
Sbjct: 52 PPSPITAIESNKAIHEKHHHRRKKW 76


>At5g36170.2 68418.m04359 peptide chain release factor, putative
          similar to SP|P28367 Peptide chain release factor 2
          (RF-2) {Bacillus subtilis}; contains Pfam profiles
          PF00472: Peptidyl-tRNA hydrolase domain, PF03462: PCRF
          domain
          Length = 455

 Score = 24.6 bits (51), Expect = 8.0
 Identities = 9/38 (23%), Positives = 18/38 (47%)

Query: 10 PERASESAKQAIERHNRLKRWLVTHLYLFPRDVRASSS 47
          P  A++ +  ++   N    WL+   Y   +DV  +S+
Sbjct: 55 PIFAAQESNLSVSNENETSEWLMQDFYTLRKDVEIASA 92


>At4g14950.3 68417.m02297 expressed protein
          Length = 406

 Score = 24.6 bits (51), Expect = 8.0
 Identities = 8/10 (80%), Positives = 10/10 (100%)

Query: 25  NRLKRWLVTH 34
           NR+KRWL+TH
Sbjct: 233 NRVKRWLLTH 242


>At4g14950.2 68417.m02295 expressed protein
          Length = 355

 Score = 24.6 bits (51), Expect = 8.0
 Identities = 8/10 (80%), Positives = 10/10 (100%)

Query: 25  NRLKRWLVTH 34
           NR+KRWL+TH
Sbjct: 233 NRVKRWLLTH 242


>At4g14950.1 68417.m02296 expressed protein
          Length = 416

 Score = 24.6 bits (51), Expect = 8.0
 Identities = 8/10 (80%), Positives = 10/10 (100%)

Query: 25  NRLKRWLVTH 34
           NR+KRWL+TH
Sbjct: 243 NRVKRWLLTH 252


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.316    0.125    0.372 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,285,763
Number of Sequences: 28952
Number of extensions: 32096
Number of successful extensions: 101
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 92
Number of HSP's gapped (non-prelim): 13
length of query: 56
length of database: 12,070,560
effective HSP length: 37
effective length of query: 19
effective length of database: 10,999,336
effective search space: 208987384
effective search space used: 208987384
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 51 (24.6 bits)