GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001104-TA|BGIBMGA001104-PA|undefined
         (56 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.17c |||conserved fungal protein|Schizosaccharomyces pom...    25   1.2  
SPAC664.05 |rpl13||60S ribosomal protein L13|Schizosaccharomyces...    24   2.1  
SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces p...    23   3.7  
SPAC630.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    23   6.4  
SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone oxidase|Schizosacch...    23   6.4  
SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr 2...    22   8.5  

>SPBC1604.17c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 459

 Score = 25.0 bits (52), Expect = 1.2
 Identities = 13/42 (30%), Positives = 25/42 (59%), Gaps = 1/42 (2%)

Query: 6   VPPEPERASESAKQAIERHNRLKRWLVTHLYLFPRDVRASSS 47
           +PP+   + +S K  +E   + K +L++HL  +  D ++SSS
Sbjct: 181 LPPDKFHSDQS-KALLEPKWKTKNYLISHLIFWIIDQQSSSS 221


>SPAC664.05 |rpl13||60S ribosomal protein L13|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 208

 Score = 24.2 bits (50), Expect = 2.1
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 3/48 (6%)

Query: 8   PEPERASESAKQAIERH-NRLKRWLVTHLYLFPRDVRASSSNSSATDV 54
           P   R    ++++++R+  R+K +L  HL +FPR          ATDV
Sbjct: 96  PVDHRRRNRSEESLQRNVERIKVYLA-HLIVFPRKA-GQPKKGDATDV 141


>SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 584

 Score = 23.4 bits (48), Expect = 3.7
 Identities = 9/23 (39%), Positives = 11/23 (47%)

Query: 8   PEPERASESAKQAIERHNRLKRW 30
           P P + + S K   E   R KRW
Sbjct: 153 PPPRKMTSSEKTRSENRERKKRW 175


>SPAC630.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 430

 Score = 22.6 bits (46), Expect = 6.4
 Identities = 11/40 (27%), Positives = 16/40 (40%)

Query: 3   KCHVPPEPERASESAKQAIERHNRLKRWLVTHLYLFPRDV 42
           KC     P   S  +K   +   R  RWL  + +   RD+
Sbjct: 68  KCESEENPNFESYHSKVGKKSCKRFMRWLKANAFAEERDI 107


>SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone
           oxidase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 461

 Score = 22.6 bits (46), Expect = 6.4
 Identities = 10/29 (34%), Positives = 16/29 (55%)

Query: 14  SESAKQAIERHNRLKRWLVTHLYLFPRDV 42
           S + +Q +ER+  L +WL     L P+ V
Sbjct: 422 SLTKEQLLERYPNLSKWLSLRKLLDPKGV 450


>SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 683

 Score = 22.2 bits (45), Expect = 8.5
 Identities = 9/32 (28%), Positives = 17/32 (53%)

Query: 23  RHNRLKRWLVTHLYLFPRDVRASSSNSSATDV 54
           + N+   W+    +L+ R+  +SSS+    DV
Sbjct: 83  KSNKALTWITDSAFLYAREDNSSSSSILLFDV 114


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.125    0.372 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 242,022
Number of Sequences: 5004
Number of extensions: 5917
Number of successful extensions: 15
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 10
Number of HSP's gapped (non-prelim): 6
length of query: 56
length of database: 2,362,478
effective HSP length: 37
effective length of query: 19
effective length of database: 2,177,330
effective search space: 41369270
effective search space used: 41369270
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 45 (22.2 bits)