GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001104-TA|BGIBMGA001104-PA|undefined
         (56 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0687 + 19465594-19465780,19465994-19466022,19466731-194668...    26   3.4  
05_04_0194 + 18949268-18951514,18952063-18952215,18952304-18954241     26   4.5  
01_01_0019 + 141084-141631,142191-142431,142563-142680,142749-14...    25   5.9  
03_02_0334 + 7570568-7570709,7571622-7571844,7572178-7572257,757...    25   7.8  

>09_04_0687 +
           19465594-19465780,19465994-19466022,19466731-19466803,
           19467237-19467311,19467583-19467644,19467727-19467795,
           19468447-19468475,19468553-19468760,19468867-19469100,
           19469591-19470598
          Length = 657

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 15/45 (33%), Positives = 23/45 (51%)

Query: 7   PPEPERASESAKQAIERHNRLKRWLVTHLYLFPRDVRASSSNSSA 51
           P  PE+  E+A++  E      R L T++   P DVR +S   +A
Sbjct: 348 PLFPEKKLEAAERIKELRRSATRKLYTYVLPTPNDVRDTSQTVTA 392


>05_04_0194 + 18949268-18951514,18952063-18952215,18952304-18954241
          Length = 1445

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 10/32 (31%), Positives = 22/32 (68%)

Query: 21  IERHNRLKRWLVTHLYLFPRDVRASSSNSSAT 52
           +ER  +LK  ++T+  L+ RD+ + S++S ++
Sbjct: 600 LERRKKLKLGMMTNHRLYERDLESDSNSSDSS 631


>01_01_0019 +
           141084-141631,142191-142431,142563-142680,142749-142789,
           143114-143146,145028-145082,145179-145339,145450-145719,
           146106-146184,146311-146375,146507-146575
          Length = 559

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 2/57 (3%)

Query: 1   MKKCHVPPEPERASESAKQAIERHNRLK-RWLVTHLYLFPRDVRASSSNSSATDVIT 56
           M K     +P+  SE+  +  +RH+ LK R+ V+ + +  ++V AS    S+ D +T
Sbjct: 475 MLKTQATSDPDSFSEAMSRVRQRHDELKERYGVSDITVSVQNV-ASQLGYSSIDSVT 530


>03_02_0334 +
          7570568-7570709,7571622-7571844,7572178-7572257,
          7572869-7572929,7573670-7573796
          Length = 210

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 13/39 (33%), Positives = 15/39 (38%)

Query: 7  PPEPERASESAKQAIERHNRLKRWLVTHLYLFPRDVRAS 45
          PP P  A  SA +A    N   RW +    L  R    S
Sbjct: 6  PPSPPPAQASAAEASGASNASLRWRILRRALLARSASTS 44


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.316    0.125    0.372 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,651,702
Number of Sequences: 37544
Number of extensions: 42002
Number of successful extensions: 163
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 160
Number of HSP's gapped (non-prelim): 4
length of query: 56
length of database: 14,793,348
effective HSP length: 36
effective length of query: 20
effective length of database: 13,441,764
effective search space: 268835280
effective search space used: 268835280
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 52 (25.0 bits)