GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001104-TA|BGIBMGA001104-PA|undefined
         (56 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22060| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   1.2  
SB_24731| Best HMM Match : DUF1534 (HMM E-Value=8.8)                   27   1.6  
SB_33399| Best HMM Match : Ank (HMM E-Value=0)                         26   3.7  
SB_43225| Best HMM Match : DUF266 (HMM E-Value=5)                      25   8.5  

>SB_22060| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 842

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 3/29 (10%)

Query: 2   KKCHVPPEPERASESAKQAIERHNRLKRW 30
           +KC+  P PE   E AK  ++ HN+ +RW
Sbjct: 682 RKCYQGPCPE---EIAKAGLKLHNQFRRW 707


>SB_24731| Best HMM Match : DUF1534 (HMM E-Value=8.8)
          Length = 128

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 11/30 (36%), Positives = 20/30 (66%), Gaps = 1/30 (3%)

Query: 1   MKKCHVPPEPERASESAKQAIE-RHNRLKR 29
           ++K  +PP P R SE A + +  ++NR++R
Sbjct: 76  VQKLRIPPPPPRRSEEATKRVRVKNNRIQR 105


>SB_33399| Best HMM Match : Ank (HMM E-Value=0)
          Length = 1416

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 10/30 (33%), Positives = 18/30 (60%)

Query: 24  HNRLKRWLVTHLYLFPRDVRASSSNSSATD 53
           H ++ +WLV H++ FP D   +   S+ +D
Sbjct: 649 HIKVVKWLVKHVHQFPSDSDCTRFISTISD 678


>SB_43225| Best HMM Match : DUF266 (HMM E-Value=5)
          Length = 154

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 12/36 (33%), Positives = 20/36 (55%)

Query: 11 ERASESAKQAIERHNRLKRWLVTHLYLFPRDVRASS 46
          E A  +AK  ++RH R++ W  T +    ++ R SS
Sbjct: 46 EEARLAAKVQVKRHIRVRLWATTGVEYTMKEGRLSS 81


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.316    0.125    0.372 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,859,877
Number of Sequences: 59808
Number of extensions: 51417
Number of successful extensions: 123
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 119
Number of HSP's gapped (non-prelim): 5
length of query: 56
length of database: 16,821,457
effective HSP length: 36
effective length of query: 20
effective length of database: 14,668,369
effective search space: 293367380
effective search space used: 293367380
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 52 (25.0 bits)