GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001104-TA|BGIBMGA001104-PA|undefined
         (56 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U13876-13|AAA21172.3|  370|Caenorhabditis elegans Prion-like-(q/...    25   8.4  

>U13876-13|AAA21172.3|  370|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 46
           protein.
          Length = 370

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 7/21 (33%), Positives = 14/21 (66%)

Query: 7   PPEPERASESAKQAIERHNRL 27
           PP+P+R+ +   Q+ E H ++
Sbjct: 130 PPQPQRSGQQPVQSFESHTQI 150


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.316    0.125    0.372 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,341,174
Number of Sequences: 27539
Number of extensions: 33140
Number of successful extensions: 80
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 79
Number of HSP's gapped (non-prelim): 1
length of query: 56
length of database: 12,573,161
effective HSP length: 37
effective length of query: 19
effective length of database: 11,554,218
effective search space: 219530142
effective search space used: 219530142
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 51 (24.6 bits)