Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001102-TA|BGIBMGA001102-PA|IPR013234|PIGA, GPI anchor
biosynthesis, IPR001296|Glycosyl transferase, group 1
         (431 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    23   3.8  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   3.8  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   6.6  

>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score = 23.4 bits (48), Expect = 3.8
 Identities = 14/51 (27%), Positives = 22/51 (43%)

Query: 266 LKHSEIRNVLVKGDIFLNTSLTEAYCMAIVEAAACGLKVVSTKVGGIPEVL 316
           L HSE RN+  + D  +   +  A    +   A  G K+   + G   EV+
Sbjct: 92  LGHSERRNIFGENDELIAEKVAHALESGLKVIACIGEKLEEREAGKTDEVV 142


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 23.4 bits (48), Expect = 3.8
 Identities = 15/58 (25%), Positives = 22/58 (37%), Gaps = 1/58 (1%)

Query: 255 GCQESVRLLGSLKHSEIRNVLVKGDIFLNTSLTEAYCMAIVEAAACGLKVVS-TKVGG 311
           G +E           E    L    +  N   TE +   +VE AAC    V+  ++GG
Sbjct: 423 GMEEPTNTASGSNEDEDETPLDPVVVISNDKSTEFFLATVVEEAACRFSAVAQAQLGG 480


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 22.6 bits (46), Expect = 6.6
 Identities = 10/27 (37%), Positives = 16/27 (59%)

Query: 271 IRNVLVKGDIFLNTSLTEAYCMAIVEA 297
           ++N  V  + FLNT+ T ++C  I  A
Sbjct: 553 LQNPKVSNEQFLNTAATLSFCEMIHNA 579


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.327    0.142    0.431 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 119,124
Number of Sequences: 429
Number of extensions: 5175
Number of successful extensions: 14
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 11
Number of HSP's gapped (non-prelim): 3
length of query: 431
length of database: 140,377
effective HSP length: 60
effective length of query: 371
effective length of database: 114,637
effective search space: 42530327
effective search space used: 42530327
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 45 (22.2 bits)