Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001101-TA|BGIBMGA001101-PA|IPR000195|RabGAP/TBC
         (381 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory recept...    23   2.8  
AM292360-1|CAL23172.2|  427|Tribolium castaneum gustatory recept...    23   2.8  
AM292331-1|CAL23143.2|  437|Tribolium castaneum gustatory recept...    23   2.8  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    23   3.6  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    23   3.6  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    23   3.6  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    23   3.6  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    23   4.8  

>AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory receptor
           candidate 40 protein.
          Length = 373

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 7/23 (30%), Positives = 17/23 (73%)

Query: 232 PFCYLYDDPVQLYYTFRAFYIRY 254
           P  +L ++P +L++TF+++ + Y
Sbjct: 42  PLNHLNEEPEKLHFTFKSWKVLY 64


>AM292360-1|CAL23172.2|  427|Tribolium castaneum gustatory receptor
           candidate 39 protein.
          Length = 427

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 13/44 (29%), Positives = 19/44 (43%)

Query: 206 QTSTDSLTVFPPSGVIPFHGFTMYATPFCYLYDDPVQLYYTFRA 249
           QT+   L +F   GV+P        T F +L    +  Y+ F A
Sbjct: 51  QTTKSLLVLFQIMGVMPIERSGKGRTTFRWLSSTSIYAYFIFGA 94


>AM292331-1|CAL23143.2|  437|Tribolium castaneum gustatory receptor
           candidate 10 protein.
          Length = 437

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 13/44 (29%), Positives = 19/44 (43%)

Query: 206 QTSTDSLTVFPPSGVIPFHGFTMYATPFCYLYDDPVQLYYTFRA 249
           QT+   L +F   GV+P        T F +L    +  Y+ F A
Sbjct: 51  QTTKSLLVLFQIMGVMPIERSGKGRTTFRWLSSTSIYAYFIFGA 94


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 10/37 (27%), Positives = 16/37 (43%)

Query: 112 CLRAKLWAQVLGSEIKGQQITYFNQLKKSVLEVDLMI 148
           CL    W   LGS  +  ++ +F   KK      L++
Sbjct: 134 CLIFAFWVPQLGSLFRSSRMCFFKSSKKPAFSHFLIV 170


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 10/37 (27%), Positives = 16/37 (43%)

Query: 112 CLRAKLWAQVLGSEIKGQQITYFNQLKKSVLEVDLMI 148
           CL    W   LGS  +  ++ +F   KK      L++
Sbjct: 134 CLIFAFWVPQLGSLFRSSRMCFFKSSKKPAFSHFLIV 170


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 10/37 (27%), Positives = 16/37 (43%)

Query: 112 CLRAKLWAQVLGSEIKGQQITYFNQLKKSVLEVDLMI 148
           CL    W   LGS  +  ++ +F   KK      L++
Sbjct: 134 CLIFAFWVPQLGSLFRSSRMCFFKSSKKPAFSHFLIV 170


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 10/37 (27%), Positives = 16/37 (43%)

Query: 112 CLRAKLWAQVLGSEIKGQQITYFNQLKKSVLEVDLMI 148
           CL    W   LGS  +  ++ +F   KK      L++
Sbjct: 134 CLIFAFWVPQLGSLFRSSRMCFFKSSKKPAFSHFLIV 170


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 3/29 (10%)

Query: 207  TSTDSLTV-FPP--SGVIPFHGFTMYATP 232
            T+T+SLT    P  S V P HG+T++  P
Sbjct: 1407 TTTNSLTFKLKPHESDVEPIHGYTIHYKP 1435


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.324    0.139    0.424 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,019
Number of Sequences: 317
Number of extensions: 3833
Number of successful extensions: 15
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 8
length of query: 381
length of database: 114,650
effective HSP length: 58
effective length of query: 323
effective length of database: 96,264
effective search space: 31093272
effective search space used: 31093272
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 44 (21.8 bits)