Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001101-TA|BGIBMGA001101-PA|IPR000195|RabGAP/TBC
(381 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0483 - 29391929-29392256,29393048-29393148,29393640-293938... 40 0.003
01_01_0001 + 2449-2616,3357-3455,4457-4560,6136-6944,7028-7150,7... 38 0.018
08_02_0654 - 19732679-19732837,19733234-19733479,19734470-197346... 33 0.50
08_02_1264 + 25706009-25706148,25706613-25706716,25707108-257072... 32 0.67
06_03_1011 - 26882011-26882157,26882576-26884248,26884607-268847... 31 1.2
03_06_0153 - 32024787-32024892,32024997-32025079,32025159-320259... 31 1.2
05_05_0145 - 22690212-22690472,22690701-22690818,22691125-226912... 31 2.0
01_06_1257 - 35778078-35778299,35778952-35779069,35779294-357794... 31 2.0
08_02_0271 - 15156737-15156868,15157134-15157235,15157342-151574... 30 2.7
12_02_0457 + 19239816-19241319,19241337-19241632,19241729-192418... 30 3.5
10_02_0127 + 5555226-5555446,5555475-5555500,5555702-5555790,555... 30 3.5
03_06_0630 + 35189575-35190216,35190700-35190910,35191001-35191737 30 3.5
>02_05_0483 -
29391929-29392256,29393048-29393148,29393640-29393834,
29394124-29394240,29394376-29394447,29394840-29394950,
29395029-29395127,29395991-29396047,29396607-29397008,
29397249-29397303,29397725-29397809,29398023-29398130,
29398229-29398295,29398717-29398875,29399277-29399405
Length = 694
Score = 39.9 bits (89), Expect = 0.003
Identities = 23/103 (22%), Positives = 45/103 (43%), Gaps = 3/103 (2%)
Query: 223 FHGFTMYATPFCYLYDDPVQLYYTFRAFYIRYWHRLHYISTHPQGIVSLCLLYERLLEAN 282
F G + + P Y+ +D + ++ F R + G+ + L +L+E
Sbjct: 501 FQGMSDFLAPILYVMEDESESFWCFAILMERLGANFN---RDQNGMHAQLLALSKLVELL 557
Query: 283 EPLLWIHFRNININPIRVVFKWLMRAFSGHLPPDQLLLLWDAI 325
+P L +FR + F+W++ F DQ++LLW+ +
Sbjct: 558 DPQLHNYFRKNDCLNYFFCFRWVLIQFKREFSFDQIMLLWEVL 600
>01_01_0001 +
2449-2616,3357-3455,4457-4560,6136-6944,7028-7150,
7232-7320,7408-7608,8210-8311,9104-9187,9232-9244,
9504-9562
Length = 616
Score = 37.5 bits (83), Expect = 0.018
Identities = 22/105 (20%), Positives = 44/105 (41%), Gaps = 2/105 (1%)
Query: 225 GFTMYATPFCYLYDDPVQLYYTFRAFYIRYWHRLHYISTHPQGIVSLCLLYERLLEANEP 284
G + +PF LY+D ++ F R R ++ P G++ +++E +
Sbjct: 435 GMSDLLSPFVVLYEDDADAFWCFEMLLRRM--RENFQMEGPTGVMKQLQALWKIMEITDV 492
Query: 285 LLWIHFRNININPIRVVFKWLMRAFSGHLPPDQLLLLWDAILGYD 329
L+ H I + F+ L+ F L ++ L +W+ + D
Sbjct: 493 ELFEHLSTIGAESLHFAFRMLLVLFRRELSFEESLSMWEMMWAAD 537
>08_02_0654 -
19732679-19732837,19733234-19733479,19734470-19734667,
19735085-19735201,19735289-19735459,19735632-19735893,
19736205-19736353
Length = 433
Score = 32.7 bits (71), Expect = 0.50
Identities = 17/52 (32%), Positives = 23/52 (44%)
Query: 275 YERLLEANEPLLWIHFRNININPIRVVFKWLMRAFSGHLPPDQLLLLWDAIL 326
+E+L+ P L HF INP +W + FS P L +WD L
Sbjct: 246 FEKLVLEQMPQLGQHFIEEMINPSMYASQWFITVFSYSFPFHLTLRVWDVFL 297
Score = 29.5 bits (63), Expect = 4.7
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 100 VVQEYLKKGSPQCLRAKLWAQVLGS 124
VV+ ++KG P CLR +W + GS
Sbjct: 101 VVKRRIRKGIPDCLRGLVWQLISGS 125
>08_02_1264 +
25706009-25706148,25706613-25706716,25707108-25707284,
25707775-25709708,25709781-25709867,25710058-25710091,
25710293-25710381,25710522-25710674
Length = 905
Score = 32.3 bits (70), Expect = 0.67
Identities = 15/48 (31%), Positives = 22/48 (45%)
Query: 278 LLEANEPLLWIHFRNININPIRVVFKWLMRAFSGHLPPDQLLLLWDAI 325
LL EP L HF + + P +WL F + LL++WD +
Sbjct: 297 LLSIVEPTLHNHFIELKVEPQWFALRWLRVLFGREFCLNDLLVVWDKV 344
>06_03_1011 -
26882011-26882157,26882576-26884248,26884607-26884783,
26885313-26885416,26885896-26886032
Length = 745
Score = 31.5 bits (68), Expect = 1.2
Identities = 15/52 (28%), Positives = 21/52 (40%), Gaps = 1/52 (1%)
Query: 274 LYERLLEANEPLLWIHFRNININPIRVVFKWLMRAFSGHLPPDQLLLLWDAI 325
+Y L + PL H + + P +WL F D LL +WD I
Sbjct: 287 IYHLLASVDSPL-HSHLMELGVEPQYFALRWLRVLFGREFSLDNLLFIWDEI 337
>03_06_0153 -
32024787-32024892,32024997-32025079,32025159-32025978,
32026122-32026327,32026887-32026975,32027132-32027192,
32027297-32027416
Length = 494
Score = 31.5 bits (68), Expect = 1.2
Identities = 17/57 (29%), Positives = 27/57 (47%)
Query: 140 SVLEVDLMIDKLIFKDVQLTASNDDQYFVFEDVLYQVMLCFSRDCDVMQQLKGSIGS 196
S +E +KL + Q S++D + D L V L S +C + Q +GS+ S
Sbjct: 264 SSVEASGSCEKLRLESCQPNISDEDFKYAKNDSLVSVELSISNECSLFQSSEGSVSS 320
>05_05_0145 -
22690212-22690472,22690701-22690818,22691125-22691261,
22691743-22691844,22691921-22692001,22692325-22692394,
22692628-22692689,22692908-22693320,22693424-22693507,
22694180-22694272,22694376-22694427,22694542-22694608,
22694714-22694772,22694920-22695033,22695174-22695347,
22695444-22695935,22696021-22696090,22696649-22696692
Length = 830
Score = 30.7 bits (66), Expect = 2.0
Identities = 15/54 (27%), Positives = 25/54 (46%)
Query: 273 LLYERLLEANEPLLWIHFRNININPIRVVFKWLMRAFSGHLPPDQLLLLWDAIL 326
L+ E L+ P L H + + V W + F+ LP + +L +WD +L
Sbjct: 344 LVLEELVREKFPKLANHLDYLGLQVAWVTGPWFLSIFTNVLPWESVLRVWDVLL 397
>01_06_1257 -
35778078-35778299,35778952-35779069,35779294-35779433,
35779763-35779864,35779971-35780051,35780333-35780402,
35781053-35781114,35781789-35782183,35782303-35782386,
35782949-35783041,35783144-35783195,35783310-35783376,
35783492-35783550,35784209-35784256,35784927-35785040,
35785162-35785335,35785417-35785944,35786025-35786094,
35786668-35786711
Length = 840
Score = 30.7 bits (66), Expect = 2.0
Identities = 15/54 (27%), Positives = 24/54 (44%)
Query: 273 LLYERLLEANEPLLWIHFRNININPIRVVFKWLMRAFSGHLPPDQLLLLWDAIL 326
L+ E L+ P L H + + V W + F LP + +L +WD +L
Sbjct: 372 LVLEELVREKFPKLVNHLDYLGVQVAWVTGPWFLSIFMNMLPWESVLRVWDVLL 425
>08_02_0271 -
15156737-15156868,15157134-15157235,15157342-15157419,
15157523-15157616,15157736-15157872,15157989-15158105,
15158470-15158940
Length = 376
Score = 30.3 bits (65), Expect = 2.7
Identities = 20/82 (24%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
Query: 58 WSSGEPLLGANPHMASAVPGFVTLEAERVSLGERVAALGYAPVVQEYLKKGSPQCLRAKL 117
W + E GAN ++ + E +++ L ++ ++KG P LR K+
Sbjct: 59 WWALEASKGANWYLQPRISSNGGSEGVISVTSLKLSVLTNTITLRRLIRKGVPPVLRPKV 118
Query: 118 WAQVLGSEIKGQQI--TYFNQL 137
W V G+ K + TY+++L
Sbjct: 119 WLSVSGAAKKRSTVPETYYDEL 140
>12_02_0457 +
19239816-19241319,19241337-19241632,19241729-19241829,
19241939-19242029,19242158-19242268,19242360-19242425,
19242457-19242462
Length = 724
Score = 29.9 bits (64), Expect = 3.5
Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 197 PLTVTIKGKQTSTDSLTVFPPSGVIPFHG-FTMYATPFCYLYDDPVQLYYTFRAF 250
P + ++ +T+TD T PP+ ++P + +A + +L+ +P T R F
Sbjct: 66 PFPIPVRVTETATDPTTSLPPAVLVPVSATWAPHAPHYLFLHANPYAYTSTRRVF 120
>10_02_0127 +
5555226-5555446,5555475-5555500,5555702-5555790,
5558112-5558843
Length = 355
Score = 29.9 bits (64), Expect = 3.5
Identities = 13/30 (43%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 172 VLYQVMLCFSRDCDVMQ-QLKGSIGSPLTV 200
+LY V+ C + DC+V++ +GS+GSP V
Sbjct: 35 LLYSVVHCRAPDCEVLEISSRGSLGSPCLV 64
>03_06_0630 + 35189575-35190216,35190700-35190910,35191001-35191737
Length = 529
Score = 29.9 bits (64), Expect = 3.5
Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 5/86 (5%)
Query: 46 TQSKQNRKLYLEWS----SGEPLLGANPHMASAVPGFVTLEAERVSLGERVAALGYAPVV 101
T + KL EWS G P + + + S F+ +EA+ E + +G P+
Sbjct: 258 TLRRHQPKLPSEWSWWMAMGSPFIQIDG-ICSIAASFMCVEAQHRLAFEILHGIGRFPLK 316
Query: 102 QEYLKKGSPQCLRAKLWAQVLGSEIK 127
+ LK +C+ K+W+ G+ ++
Sbjct: 317 AKRLKGVKKKCINKKVWSPADGAFVE 342
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.324 0.139 0.424
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,351,715
Number of Sequences: 37544
Number of extensions: 413733
Number of successful extensions: 971
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 961
Number of HSP's gapped (non-prelim): 16
length of query: 381
length of database: 14,793,348
effective HSP length: 83
effective length of query: 298
effective length of database: 11,677,196
effective search space: 3479804408
effective search space used: 3479804408
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 61 (28.7 bits)
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