Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001101-TA|BGIBMGA001101-PA|IPR000195|RabGAP/TBC
         (381 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.         25   1.1  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   5.7  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   7.6  

>AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.
          Length = 104

 Score = 25.0 bits (52), Expect = 1.1
 Identities = 10/28 (35%), Positives = 17/28 (60%)

Query: 278 LLEANEPLLWIHFRNININPIRVVFKWL 305
           L+++NEPLL +  R +  + +    KWL
Sbjct: 47  LMDSNEPLLPLRHRRVTCDVLSWQSKWL 74


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 5.7
 Identities = 8/14 (57%), Positives = 9/14 (64%)

Query: 63  PLLGANPHMASAVP 76
           PL+G  PH  SA P
Sbjct: 495 PLVGVQPHQDSATP 508


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 22.2 bits (45), Expect = 7.6
 Identities = 11/41 (26%), Positives = 21/41 (51%), Gaps = 2/41 (4%)

Query: 24  QQAMKEKGLDTKLRNTVFHWVRTQ--SKQNRKLYLEWSSGE 62
           QQA  +      L + ++ W+R+Q   K+ R+ Y  + + E
Sbjct: 244 QQAAPQGAASANLPSPLYPWMRSQFERKRGRQTYTRYQTLE 284


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.324    0.139    0.424 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,394
Number of Sequences: 429
Number of extensions: 4227
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 9
Number of HSP's gapped (non-prelim): 3
length of query: 381
length of database: 140,377
effective HSP length: 59
effective length of query: 322
effective length of database: 115,066
effective search space: 37051252
effective search space used: 37051252
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 45 (22.2 bits)