GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001101-TA|BGIBMGA001101-PA|IPR000195|RabGAP/TBC
         (381 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch...    38   0.003
SPAC1952.17c ||SPAC890.01c|GTPase activating protein|Schizosacch...    31   0.20 
SPBPB2B2.06c |||phosphoprotein phosphatase |Schizosaccharomyces ...    29   1.4  
SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces p...    29   1.4  
SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces pom...    27   3.3  
SPCC757.10 |vph2||endoplasmic reticulum membrane involved in ass...    27   3.3  
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    27   3.3  
SPAPB1A10.04c |cwp1||geranylgeranyltransferase I alpha subunit C...    27   3.3  
SPCC4G3.09c |gyp3||GTPase activating protein Gyp3|Schizosaccharo...    27   4.4  
SPAC23D3.03c |||GTPase activating protein |Schizosaccharomyces p...    26   7.7  

>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1031

 Score = 37.5 bits (83), Expect = 0.003
 Identities = 20/89 (22%), Positives = 39/89 (43%)

Query: 240 PVQLYYTFRAFYIRYWHRLHYISTHPQGIVSLCLLYERLLEANEPLLWIHFRNININPIR 299
           P    +    F  + +H  +  S+  +G+  +   + RL+E   P L IHF+  +I    
Sbjct: 717 PAPQAFALLVFLFKNYHLQNIFSSEMRGLSRVLHQFTRLVEDYMPSLAIHFKRQDIKTCS 776

Query: 300 VVFKWLMRAFSGHLPPDQLLLLWDAILGY 328
              +W +  F+   P + +  L+D +  Y
Sbjct: 777 YASEWFLTLFAYKFPLEVVAHLYDILFLY 805


>SPAC1952.17c ||SPAC890.01c|GTPase activating
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 619

 Score = 31.5 bits (68), Expect = 0.20
 Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 2/73 (2%)

Query: 254 YWHRLHYISTHPQGIVSLCLLYERLLEANEPLLWIHFRNININPIRVVFKWLMRAFSGHL 313
           Y   L + S H  GI  L   +   L+  +  LW +     I+P    F+W     S   
Sbjct: 314 YEKTLDHDSDH--GIHFLMSKFTERLKKYDYELWENLEEKQIHPTYYSFRWFTCLLSQEF 371

Query: 314 PPDQLLLLWDAIL 326
           P   ++ LWD+I+
Sbjct: 372 PLPDVIRLWDSII 384


>SPBPB2B2.06c |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 601

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 35/140 (25%), Positives = 58/140 (41%), Gaps = 13/140 (9%)

Query: 32  LDTKLRNTVFHWVRTQSKQNRKLYLEWSSGEPLLGANPHMASAVPGFVTLEAERVSLGER 91
           L+  L N   +      K  +KLY   + G  L   N ++A+  PG+VT +      GE 
Sbjct: 453 LNPFLTNYYMYLADVPYKYAKKLYSTLNGGSNLRNINENLAALNPGYVTSD----DFGED 508

Query: 92  VAALGYAPVVQEYLKKGSPQCLRAKLWAQVLGSEIKGQQITYFNQLKKSVLEVDLMIDKL 151
               G   V        +P  L+A+       S  +   + + N L+  VL+    ++ +
Sbjct: 509 ----GDDTVHTSVPSYATPNILQAQAGFNATSSP-ETIDVVFLNFLQSIVLKA---LNNM 560

Query: 152 IFKDVQLTASNDDQYFVFED 171
              D   T+SN  QY+V +D
Sbjct: 561 A-NDTLYTSSNVTQYWVRDD 579


>SPAC1039.02 |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 601

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 33/124 (26%), Positives = 55/124 (44%), Gaps = 15/124 (12%)

Query: 49  KQNRKLYLEWSSGEPLLGANPHMASAVPGFVTLEAERVSLGERVAALGYAPVVQEYLKKG 108
           K  +KLY   + G  L   N ++A+  PG+VT +      GE     G   V        
Sbjct: 470 KYAKKLYSILNGGSTLRNVNDYLAALNPGYVTSD----DFGED----GDDTVHTYVSTYA 521

Query: 109 SPQCLRAKLWAQVLGSEIKGQQITYFNQLKKSVLE-VDLMIDKLIFKDVQLTASNDDQYF 167
            P  L+A++      S  +   + + N  +  VL+ ++ M+++ I+     T SN  QY+
Sbjct: 522 VPNVLQAQVGFNTT-SAPETVDVVFLNYFQTKVLKALNTMVNETIY-----TLSNVTQYW 575

Query: 168 VFED 171
           V ED
Sbjct: 576 VRED 579


>SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 772

 Score = 27.5 bits (58), Expect = 3.3
 Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 9/63 (14%)

Query: 102 QEYLKKGSPQCLRAKLWAQVLGSEIKGQQITYFNQL--------KKSVLEVDLMIDKLIF 153
           +E +K G P C +AK+W +  G+  +     Y+ +L          SV ++D+ I++ + 
Sbjct: 498 RELVKNGVPLCYKAKVWLECSGA-YQLHSPGYYEELLSRTDEVESASVAQIDMDINRTMA 556

Query: 154 KDV 156
           K+V
Sbjct: 557 KNV 559


>SPCC757.10 |vph2||endoplasmic reticulum membrane involved in
           assembly of the V-ATPase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 186

 Score = 27.5 bits (58), Expect = 3.3
 Identities = 10/42 (23%), Positives = 23/42 (54%)

Query: 44  VRTQSKQNRKLYLEWSSGEPLLGANPHMASAVPGFVTLEAER 85
           VRT     R++   W++ +P+L +N  +A  +    +L+ ++
Sbjct: 143 VRTSKNHTRQIIYTWTTNDPVLQSNEQLAIELGAIPSLKEKK 184


>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2104

 Score = 27.5 bits (58), Expect = 3.3
 Identities = 13/52 (25%), Positives = 26/52 (50%)

Query: 125  EIKGQQITYFNQLKKSVLEVDLMIDKLIFKDVQLTASNDDQYFVFEDVLYQV 176
            E+K       NQL + + E+  M+++ I  + +L   N +   + E + YQ+
Sbjct: 1126 ELKSLHTKEANQLSERIKEISEMLEQSIATEEKLRRKNSELCDIIEALKYQI 1177


>SPAPB1A10.04c |cwp1||geranylgeranyltransferase I alpha subunit
           Cwp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 294

 Score = 27.5 bits (58), Expect = 3.3
 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 3/49 (6%)

Query: 264 HPQGIVSLCLLYERLLEANEPLLWIHFRNININPIRVVFKWLMRAFSGH 312
           H Q I+SL   YER LE  + +  I  +N ++   RV   W+++ F+ +
Sbjct: 116 HRQKILSLTKNYERELEFTKKMFEIDSKNYHVWSYRV---WILQNFNDY 161


>SPCC4G3.09c |gyp3||GTPase activating protein
           Gyp3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 635

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 11/24 (45%), Positives = 13/24 (54%)

Query: 300 VVFKWLMRAFSGHLPPDQLLLLWD 323
           V   W M AF G LP +  L +WD
Sbjct: 491 VTAAWFMSAFVGILPTETALRVWD 514


>SPAC23D3.03c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 472

 Score = 26.2 bits (55), Expect = 7.7
 Identities = 8/30 (26%), Positives = 19/30 (63%)

Query: 106 KKGSPQCLRAKLWAQVLGSEIKGQQITYFN 135
           ++G P  +R ++W + +G+ +K    ++FN
Sbjct: 213 RQGIPSRVRGRVWEKAIGNNLKLDYQSFFN 242


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.324    0.139    0.424 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,706,050
Number of Sequences: 5004
Number of extensions: 70824
Number of successful extensions: 226
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 216
Number of HSP's gapped (non-prelim): 11
length of query: 381
length of database: 2,362,478
effective HSP length: 74
effective length of query: 307
effective length of database: 1,992,182
effective search space: 611599874
effective search space used: 611599874
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 55 (26.2 bits)