Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001101-TA|BGIBMGA001101-PA|IPR000195|RabGAP/TBC
(381 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_33425| Best HMM Match : No HMM Matches (HMM E-Value=.) 102 6e-22
SB_22474| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.014
SB_7605| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.073
SB_45281| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.13
SB_3533| Best HMM Match : Pentapeptide (HMM E-Value=5.7) 32 0.89
SB_42709| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.6
SB_32178| Best HMM Match : TBC (HMM E-Value=3.2e-06) 31 2.1
SB_40737| Best HMM Match : Extensin_2 (HMM E-Value=2.2) 30 2.7
SB_12369| Best HMM Match : S-antigen (HMM E-Value=0.11) 30 2.7
SB_10583| Best HMM Match : TBC (HMM E-Value=6.89999e-42) 30 2.7
SB_48859| Best HMM Match : TBC (HMM E-Value=7.1e-12) 29 8.3
>SB_33425| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 957
Score = 102 bits (244), Expect = 6e-22
Identities = 43/112 (38%), Positives = 72/112 (64%)
Query: 82 EAERVSLGERVAALGYAPVVQEYLKKGSPQCLRAKLWAQVLGSEIKGQQITYFNQLKKSV 141
E + +G++V G A +++ K G P +R ++W Q+L + + YF QLK V
Sbjct: 275 ETDWYKMGKKVVHNGSAMAARQFAKYGCPSGIRGEIWKQILCLNVDDVDLLYFEQLKSYV 334
Query: 142 LEVDLMIDKLIFKDVQLTASNDDQYFVFEDVLYQVMLCFSRDCDVMQQLKGS 193
++ ++++D L+ KD+++TA+NDD YFVFED+LYQ ML F+RD V++ + S
Sbjct: 335 IQHEMLVDSLVMKDIRITATNDDDYFVFEDLLYQAMLVFTRDTAVLKHFQQS 386
>SB_22474| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 642
Score = 37.9 bits (84), Expect = 0.014
Identities = 15/49 (30%), Positives = 23/49 (46%)
Query: 278 LLEANEPLLWIHFRNININPIRVVFKWLMRAFSGHLPPDQLLLLWDAIL 326
LL P L+ HF N+ ++ + F W + F P +L +WD L
Sbjct: 490 LLMEKLPRLYTHFENVRVDLSLITFNWFLTVFIDSFPIQTILRVWDTFL 538
>SB_7605| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 667
Score = 35.5 bits (78), Expect = 0.073
Identities = 19/90 (21%), Positives = 37/90 (41%), Gaps = 1/90 (1%)
Query: 237 YDDPVQLYYTFRAFYIRYWHRLHYISTHPQGIVSLCLLYERLLEANEPLLWIHFRNININ 296
++D Y AF +Y + ++ + I ++ +L+ ++P L+ H I
Sbjct: 375 FNDEALAYACLTAFIPKYLYNF-FLKDNAPIIQEYLAVFSQLIAFHDPELFSHMHKIGFI 433
Query: 297 PIRVVFKWLMRAFSGHLPPDQLLLLWDAIL 326
P W + F P ++ LWD +L
Sbjct: 434 PELYAIPWFLTMFCHVFPLHKIYHLWDTLL 463
>SB_45281| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1256
Score = 34.7 bits (76), Expect = 0.13
Identities = 33/121 (27%), Positives = 56/121 (46%), Gaps = 10/121 (8%)
Query: 9 VASPNVKKEDFKQTLQQAMKEKGLDTKLRNTVFHWVRTQSKQNRKLYLEWSSGEPLL-GA 67
V P V+ D ++ ++Q +KE G +L+ V T SK+ + G+ G
Sbjct: 678 VIKPEVEP-DQRELIKQRIKEAGFKIQLQKEV-----TLSKELASQFYHEHEGKDFFEGL 731
Query: 68 NPHMASAVPGFVTLEAERVSLGERVAALGYAPVVQEYLKKGSPQCLRAKLWAQVLGSEIK 127
+M+S F+ L E G R + +G PV E K+ +P+ +RA L V+ + +
Sbjct: 732 TDYMSSGPTMFMVLSKEDAVSGWR-SLMG--PVDPEQAKEMAPESIRAALGKDVMKNVVH 788
Query: 128 G 128
G
Sbjct: 789 G 789
>SB_3533| Best HMM Match : Pentapeptide (HMM E-Value=5.7)
Length = 416
Score = 31.9 bits (69), Expect = 0.89
Identities = 40/140 (28%), Positives = 65/140 (46%), Gaps = 9/140 (6%)
Query: 59 SSGEPLLGANPHMASAVPGFVTLEAE--RVSLGERVAALGYAPVVQEYLKKGSPQCLRAK 116
S+ L+ + MASA G V LE+E +V L A++G P+ E L K Q A
Sbjct: 190 STAPELMKVDLQMASASIGLVPLESELMKVDLQMTSASIGLVPLESE-LMKVDLQMASAS 248
Query: 117 LWAQVLGSEIKGQQITYFNQLKKSVLEVDLMIDKLIFKDVQLTASNDDQYFVFEDVLYQV 176
+ +L SE+ + Q+ + + + L+ +L+ D+Q+ AS + E L +V
Sbjct: 249 IGLVLLESELMKVDL----QMASASIGLVLLESELMKVDLQM-ASASIGLVLLESELMKV 303
Query: 177 MLCFSRDCDV-MQQLKGSIG 195
L + V +Q SIG
Sbjct: 304 DLQMNELMKVDLQMTSASIG 323
>SB_42709| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1616
Score = 31.1 bits (67), Expect = 1.6
Identities = 20/86 (23%), Positives = 32/86 (37%)
Query: 274 LYERLLEANEPLLWIHFRNININPIRVVFKWLMRAFSGHLPPDQLLLLWDAILGYDCXXX 333
L+ LL+ ++P L + ++P WL G + PD + LWD L
Sbjct: 168 LFRLLLQYHDPELCSFMDSRKLSPDSYCLMWLRSLLVGAVEPDVVRTLWDVYLLESDPFL 227
Query: 334 XXXXXXXXXSFRKENIFQVNTLQNVD 359
K+ IF++ T D
Sbjct: 228 IFFLVLVMIVNAKDQIFELKTASKAD 253
>SB_32178| Best HMM Match : TBC (HMM E-Value=3.2e-06)
Length = 759
Score = 30.7 bits (66), Expect = 2.1
Identities = 13/43 (30%), Positives = 21/43 (48%)
Query: 284 PLLWIHFRNININPIRVVFKWLMRAFSGHLPPDQLLLLWDAIL 326
P L HF+ ++ V F WL+ + +P + L +WD L
Sbjct: 56 PALHAHFKYYGVDLSTVTFNWLITIYLDAVPFETGLRIWDCFL 98
>SB_40737| Best HMM Match : Extensin_2 (HMM E-Value=2.2)
Length = 409
Score = 30.3 bits (65), Expect = 2.7
Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Query: 222 PFHGFTMYATPF-CYL-YDDPVQLYYTFRAFY 251
P+H +T+YA+P+ Y+ Y P +Y T+ + Y
Sbjct: 344 PYHTYTIYASPYHNYITYASPYHIYITYASLY 375
>SB_12369| Best HMM Match : S-antigen (HMM E-Value=0.11)
Length = 1123
Score = 30.3 bits (65), Expect = 2.7
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 21 QTLQQAMKEKGLDTKLRNTVFHWVRTQSKQNRKLYLEWSSGEPLLGANPHMASAVPGFVT 80
Q +++A+KE+ LD L+ V V T K +E + G LGA + S + G +
Sbjct: 574 QDIEKAVKERDLDA-LQKGVTDAVVTAVKPMAGKVIEQTEGAVDLGATLGLKSELMGAIG 632
Query: 81 LEAERVS 87
EA R+S
Sbjct: 633 REASRIS 639
>SB_10583| Best HMM Match : TBC (HMM E-Value=6.89999e-42)
Length = 297
Score = 30.3 bits (65), Expect = 2.7
Identities = 16/73 (21%), Positives = 42/73 (57%), Gaps = 5/73 (6%)
Query: 101 VQEYLKKGSPQCLRAKLWAQVLGSEIKGQQIT-YFNQLKKSVLEVDLMIDKLIFKDVQLT 159
++ +++KG P RA++W + G+ + +++ Y+ L +S L+ D++ + ++ +
Sbjct: 72 IKRFVRKGVPSSHRAQVWMDISGARKRMKKLPGYYQSLLESELD-DIVRNSIL---TVVP 127
Query: 160 ASNDDQYFVFEDV 172
A++ + VF D+
Sbjct: 128 AADTFMFVVFTDI 140
>SB_48859| Best HMM Match : TBC (HMM E-Value=7.1e-12)
Length = 660
Score = 28.7 bits (61), Expect = 8.3
Identities = 15/49 (30%), Positives = 22/49 (44%)
Query: 275 YERLLEANEPLLWIHFRNININPIRVVFKWLMRAFSGHLPPDQLLLLWD 323
+E LL L HF + + +P + W+ FS LP D +WD
Sbjct: 527 FEILLSEFLNKLHEHFHHESFSPDMYLIDWIFTLFSKSLPLDVACRVWD 575
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.324 0.139 0.424
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,919,694
Number of Sequences: 59808
Number of extensions: 478994
Number of successful extensions: 1362
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1331
Number of HSP's gapped (non-prelim): 33
length of query: 381
length of database: 16,821,457
effective HSP length: 83
effective length of query: 298
effective length of database: 11,857,393
effective search space: 3533503114
effective search space used: 3533503114
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 61 (28.7 bits)
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