Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001101-TA|BGIBMGA001101-PA|IPR000195|RabGAP/TBC
(381 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U49830-13|AAK31474.1| 826|Caenorhabditis elegans Hypothetical p... 46 4e-05
U42831-1|AAA83513.2| 614|Caenorhabditis elegans Hypothetical pr... 36 0.036
Z78539-6|CAB01733.2| 1272|Caenorhabditis elegans Hypothetical pr... 36 0.048
Z37983-2|CAA86055.1| 585|Caenorhabditis elegans Hypothetical pr... 36 0.048
AF040654-3|AAK21451.2| 445|Caenorhabditis elegans Hypothetical ... 33 0.44
Z68117-1|CAA92181.2| 459|Caenorhabditis elegans Hypothetical pr... 30 3.1
U23448-4|AAS80348.1| 330|Caenorhabditis elegans Hypothetical pr... 29 4.1
AL110485-2|CAE45741.1| 1021|Caenorhabditis elegans Hypothetical ... 29 4.1
AL110485-1|CAB60374.3| 1085|Caenorhabditis elegans Hypothetical ... 29 4.1
Z46792-3|CAA86765.2| 131|Caenorhabditis elegans Hypothetical pr... 29 5.5
U61946-2|AAC24387.1| 341|Caenorhabditis elegans Serpentine rece... 29 7.2
DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-t... 29 7.2
AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-t... 29 7.2
AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel... 29 7.2
AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel... 29 7.2
U49940-1|AAA93411.2| 435|Caenorhabditis elegans Hypothetical pr... 28 9.5
AF016450-8|AAB65993.1| 578|Caenorhabditis elegans Hypothetical ... 28 9.5
>U49830-13|AAK31474.1| 826|Caenorhabditis elegans Hypothetical
protein C33F10.2 protein.
Length = 826
Score = 46.0 bits (104), Expect = 4e-05
Identities = 33/132 (25%), Positives = 56/132 (42%), Gaps = 8/132 (6%)
Query: 193 SIGSPLTVTIKGKQTSTDSLTVFPPSGVIPFHGFTMYATPFCYL-YDDPVQLYYTFRAFY 251
+I L +KG Q T+S + + G ATPF P + F+ F
Sbjct: 504 AIQESLRKVLKGWQIVTES------QHFVYWQGCDSLATPFLLANMSKPHVAFACFKEFT 557
Query: 252 IRYWHRLHYISTHPQGIVSLCLLYERLLEANEPLLWIHFRNININPIRVVFKWLMRAFSG 311
RY H+ Y+ + + I ++ L+ +P+L+ H + + W + F+
Sbjct: 558 YRYCHKF-YLKDNSEVIKEYLGIFYHLVAYTDPVLYKHLKINGFDAELFAIPWFLTCFAH 616
Query: 312 HLPPDQLLLLWD 323
LP +L+LLWD
Sbjct: 617 ELPLSKLVLLWD 628
>U42831-1|AAA83513.2| 614|Caenorhabditis elegans Hypothetical
protein R11B5.1 protein.
Length = 614
Score = 36.3 bits (80), Expect = 0.036
Identities = 20/85 (23%), Positives = 34/85 (40%), Gaps = 1/85 (1%)
Query: 239 DPVQLYYTFRAFYIRYWHRLHYISTHPQGIVSLCLLYERLLEANEPLLWIHFRNININPI 298
DP + +F R + PQ + + Y+R LE P L H +++ P
Sbjct: 412 DPYPAFISFANLLDRSLQSAFFGLKQPQ-MTEYFIAYDRYLEQELPALHQHLDKLDVRPD 470
Query: 299 RVVFKWLMRAFSGHLPPDQLLLLWD 323
+ +W ++ LP D +WD
Sbjct: 471 LYLIEWTFAMYAKSLPLDVTCRIWD 495
>Z78539-6|CAB01733.2| 1272|Caenorhabditis elegans Hypothetical
protein C31E10.8 protein.
Length = 1272
Score = 35.9 bits (79), Expect = 0.048
Identities = 21/91 (23%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
Query: 236 LYDDPVQLYYTFRAFYIRYWHRLHYISTHPQGIVSLCLLYERLLEANEPLLWIHFRNINI 295
L+ P ++ A RY+ + Y ++ G + + + LLE P + H ++++I
Sbjct: 482 LFVGPEDAFWFLIAVTERYFDKT-YFDSNLTGAQADQEVLKGLLEVQHPKIMKHLKSLDI 540
Query: 296 NPIRVVFKWLMRAFSGHLPPDQLLLLWDAIL 326
+ W + F +P + LL +WD L
Sbjct: 541 DVASFTLNWFISLFFDAVPFNTLLRIWDCFL 571
>Z37983-2|CAA86055.1| 585|Caenorhabditis elegans Hypothetical
protein B0393.2 protein.
Length = 585
Score = 35.9 bits (79), Expect = 0.048
Identities = 18/49 (36%), Positives = 23/49 (46%)
Query: 278 LLEANEPLLWIHFRNININPIRVVFKWLMRAFSGHLPPDQLLLLWDAIL 326
LL +P L H ++I P +WL F LP LL LWD +L
Sbjct: 271 LLHEIDPTLAKHLSTLDIPPQLYGIRWLRLLFGRELPLHDLLFLWDVLL 319
>AF040654-3|AAK21451.2| 445|Caenorhabditis elegans Hypothetical
protein R06B10.5 protein.
Length = 445
Score = 32.7 bits (71), Expect = 0.44
Identities = 14/50 (28%), Positives = 25/50 (50%)
Query: 277 RLLEANEPLLWIHFRNININPIRVVFKWLMRAFSGHLPPDQLLLLWDAIL 326
+L++ L + HF+ ++P + +W M F LP +L +WD L
Sbjct: 315 KLIKDRSKLTYRHFKANGVDPALYMIEWFMCCFCRTLPWPTVLRVWDMFL 364
>Z68117-1|CAA92181.2| 459|Caenorhabditis elegans Hypothetical
protein F45E6.3 protein.
Length = 459
Score = 29.9 bits (64), Expect = 3.1
Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Query: 267 GIVSLCLLYERLLEANEPLLWIHFR-NININPIRVVFKWLMRAFSGHLPPDQLLLLWDAI 325
GI S + L+ + L H + I P F+WL S P ++ LWDA+
Sbjct: 307 GIESSMSAFHNLISTFDTELHKHLTLTLEIKPQFYAFRWLSLLLSQEFPLPDVITLWDAL 366
>U23448-4|AAS80348.1| 330|Caenorhabditis elegans Hypothetical
protein C04A2.1 protein.
Length = 330
Score = 29.5 bits (63), Expect = 4.1
Identities = 17/91 (18%), Positives = 43/91 (47%), Gaps = 4/91 (4%)
Query: 278 LLEANEPLLWIHFRNININPIRVVFKWLMRAFSGHLPPDQLLLLWDAILGYDCXXXXXXX 337
LL + P + + +++ +V KW + F LP + +L LWD ++ Y+
Sbjct: 205 LLREHCPRVVVTLEKLDVGLDMLVGKWFVCWFVESLPMETVLRLWDCLI-YE---GDEWL 260
Query: 338 XXXXXSFRKENIFQVNTLQNVDAVLADLSTI 368
+ + N+ +++ +++D ++ ++ I
Sbjct: 261 FRIAVALFRSNMIAISSCESIDQLMTEVQNI 291
>AL110485-2|CAE45741.1| 1021|Caenorhabditis elegans Hypothetical
protein Y46G5A.1b protein.
Length = 1021
Score = 29.5 bits (63), Expect = 4.1
Identities = 53/235 (22%), Positives = 97/235 (41%), Gaps = 38/235 (16%)
Query: 96 GYAPVVQEYLKKGSPQCLRAKLWAQVLGSE-IKGQQITYFNQLKKSVLEVDLMIDKLIFK 154
G + +++ + KG P+ LR +W ++LG+E +K ++ + +L L+ +L+ K
Sbjct: 580 GPSKKMEDRIWKGIPEKLRIVIWPRLLGAERLKHERRDVYAEL--------LLRARLVSK 631
Query: 155 DVQLTASNDDQYFVFEDVLYQVMLCFSRDCDVMQQLKGSIGSPLTVTIKGKQTSTDSLTV 214
D++ Q + + Y+ L F + DV Q+ S L V +T+
Sbjct: 632 DIK-------QIDLDINRTYRDHLAFRKRYDVKQK------SLLNVLAAYSMFNTEVGYC 678
Query: 215 FPPSGVIPFHGFTMYATP---FCYLYDDPVQLYYTFRAFYIRYWHRLHYISTHPQGIVSL 271
S + F MY F L+ V +T F++ + +L H
Sbjct: 679 QGMSQIAAL--FLMYLDEEDAFWSLHQLMVSPKHTMHGFFVPGFPKLQRYEEH------- 729
Query: 272 CLLYERLLEANEPLLWIHFRNININPIRVVFKWLMRAFSGHLPPDQLLLLWDAIL 326
++R+L+ +P ++ H +I P + KW F +P L LWD L
Sbjct: 730 ---FKRVLKKYKPRVYKHLEKQDI-PYIYLTKWWFGCFLDRVPFSLALRLWDVFL 780
>AL110485-1|CAB60374.3| 1085|Caenorhabditis elegans Hypothetical
protein Y46G5A.1a protein.
Length = 1085
Score = 29.5 bits (63), Expect = 4.1
Identities = 53/235 (22%), Positives = 97/235 (41%), Gaps = 38/235 (16%)
Query: 96 GYAPVVQEYLKKGSPQCLRAKLWAQVLGSE-IKGQQITYFNQLKKSVLEVDLMIDKLIFK 154
G + +++ + KG P+ LR +W ++LG+E +K ++ + +L L+ +L+ K
Sbjct: 580 GPSKKMEDRIWKGIPEKLRIVIWPRLLGAERLKHERRDVYAEL--------LLRARLVSK 631
Query: 155 DVQLTASNDDQYFVFEDVLYQVMLCFSRDCDVMQQLKGSIGSPLTVTIKGKQTSTDSLTV 214
D++ Q + + Y+ L F + DV Q+ S L V +T+
Sbjct: 632 DIK-------QIDLDINRTYRDHLAFRKRYDVKQK------SLLNVLAAYSMFNTEVGYC 678
Query: 215 FPPSGVIPFHGFTMYATP---FCYLYDDPVQLYYTFRAFYIRYWHRLHYISTHPQGIVSL 271
S + F MY F L+ V +T F++ + +L H
Sbjct: 679 QGMSQIAAL--FLMYLDEEDAFWSLHQLMVSPKHTMHGFFVPGFPKLQRYEEH------- 729
Query: 272 CLLYERLLEANEPLLWIHFRNININPIRVVFKWLMRAFSGHLPPDQLLLLWDAIL 326
++R+L+ +P ++ H +I P + KW F +P L LWD L
Sbjct: 730 ---FKRVLKKYKPRVYKHLEKQDI-PYIYLTKWWFGCFLDRVPFSLALRLWDVFL 780
>Z46792-3|CAA86765.2| 131|Caenorhabditis elegans Hypothetical
protein C52A11.3 protein.
Length = 131
Score = 29.1 bits (62), Expect = 5.5
Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 13/95 (13%)
Query: 27 MKEKGLDTKLRNTVFHWVRTQSKQNRKLYLEWSSGEPLLGANPHMASAVPGFVTLEAERV 86
+KE+G DT L V+ Q NRK+ + G + + + VPG V AE++
Sbjct: 42 LKEEGCDTLL-------VKLQKDANRKIGM----GVGVRDRGILITTVVPGSVA--AEKL 88
Query: 87 SLGERVAALGYAPVVQEYLKKGSPQCLRAKLWAQV 121
+G+R+ A+ P++ + S + +L+ Q+
Sbjct: 89 KVGDRILAVNGRPILDQRSVVKSVKASGQRLYLQI 123
>U61946-2|AAC24387.1| 341|Caenorhabditis elegans Serpentine
receptor, class h protein220 protein.
Length = 341
Score = 28.7 bits (61), Expect = 7.2
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 226 FTMYATPFCYLYDDPVQLYYTFRAFYIRYWHRLHYISTHPQGIVSLCLL 274
F A PFC ++ P+ +YYTF F+ + Y+ G+VS ++
Sbjct: 249 FIQLALPFCIIWV-PI-IYYTFIGFFNAAINNFMYVLMATHGLVSTLVM 295
>DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-type
voltage-gatedion channel alpha-1 subunit protein.
Length = 1797
Score = 28.7 bits (61), Expect = 7.2
Identities = 19/65 (29%), Positives = 37/65 (56%), Gaps = 5/65 (7%)
Query: 129 QQITYFNQLKKSVLEVDLMIDKLIFKDV--QLTASNDDQYFVFEDVLYQVMLCFSRDCDV 186
+++ + +L K LEVD D+++FK + ++ ++ + F DVLY ML + R D+
Sbjct: 1494 ERVKFLLRLLKGRLEVDPEKDRILFKHMCYEMERLHNGEEVSFHDVLY--MLSY-RSVDI 1550
Query: 187 MQQLK 191
+ L+
Sbjct: 1551 RKSLQ 1555
>AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-type
voltage-gatedion channel alpha-1 subunit protein.
Length = 1831
Score = 28.7 bits (61), Expect = 7.2
Identities = 19/65 (29%), Positives = 37/65 (56%), Gaps = 5/65 (7%)
Query: 129 QQITYFNQLKKSVLEVDLMIDKLIFKDV--QLTASNDDQYFVFEDVLYQVMLCFSRDCDV 186
+++ + +L K LEVD D+++FK + ++ ++ + F DVLY ML + R D+
Sbjct: 1528 ERVKFLLRLLKGRLEVDPEKDRILFKHMCYEMERLHNGEEVSFHDVLY--MLSY-RSVDI 1584
Query: 187 MQQLK 191
+ L+
Sbjct: 1585 RKSLQ 1589
>AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
c protein.
Length = 1913
Score = 28.7 bits (61), Expect = 7.2
Identities = 19/65 (29%), Positives = 37/65 (56%), Gaps = 5/65 (7%)
Query: 129 QQITYFNQLKKSVLEVDLMIDKLIFKDV--QLTASNDDQYFVFEDVLYQVMLCFSRDCDV 186
+++ + +L K LEVD D+++FK + ++ ++ + F DVLY ML + R D+
Sbjct: 1639 ERVKFLLRLLKGRLEVDPEKDRILFKHMCYEMERLHNGEEVSFHDVLY--MLSY-RSVDI 1695
Query: 187 MQQLK 191
+ L+
Sbjct: 1696 RKSLQ 1700
>AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
d protein.
Length = 1861
Score = 28.7 bits (61), Expect = 7.2
Identities = 19/65 (29%), Positives = 37/65 (56%), Gaps = 5/65 (7%)
Query: 129 QQITYFNQLKKSVLEVDLMIDKLIFKDV--QLTASNDDQYFVFEDVLYQVMLCFSRDCDV 186
+++ + +L K LEVD D+++FK + ++ ++ + F DVLY ML + R D+
Sbjct: 1558 ERVKFLLRLLKGRLEVDPEKDRILFKHMCYEMERLHNGEEVSFHDVLY--MLSY-RSVDI 1614
Query: 187 MQQLK 191
+ L+
Sbjct: 1615 RKSLQ 1619
>U49940-1|AAA93411.2| 435|Caenorhabditis elegans Hypothetical
protein T24D11.1 protein.
Length = 435
Score = 28.3 bits (60), Expect = 9.5
Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Query: 269 VSLCLLY-ERLLEANEPLLWIHFRNININPIRVVFKWLMRAFSGHLPPDQLLLLWDAIL 326
+ LC+ E L++ P L+ HF N+ + W + F+ +P D + D L
Sbjct: 233 LGLCMFQLECLVQDQMPDLYTHFNNMGFDTSMYASSWFLTLFTTTMPLDIANRIMDCFL 291
>AF016450-8|AAB65993.1| 578|Caenorhabditis elegans Hypothetical
protein B0238.7 protein.
Length = 578
Score = 28.3 bits (60), Expect = 9.5
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Query: 195 GSPLTVTIKGKQ---TSTDSLTVFPPSGVIPFHGFTMYATPFC 234
G+P +VT+ G TSTD L++ P S + +M T FC
Sbjct: 216 GNPESVTLSGTSAGATSTDFLSLSPHSNQLFQRSISMSGTAFC 258
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.324 0.139 0.424
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,035,375
Number of Sequences: 27539
Number of extensions: 374857
Number of successful extensions: 1056
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1047
Number of HSP's gapped (non-prelim): 23
length of query: 381
length of database: 12,573,161
effective HSP length: 83
effective length of query: 298
effective length of database: 10,287,424
effective search space: 3065652352
effective search space used: 3065652352
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 60 (28.3 bits)
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