Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001101-TA|BGIBMGA001101-PA|IPR000195|RabGAP/TBC
(381 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g59570.1 68416.m06647 RabGAP/TBC domain-containing protein si... 38 0.011
At5g15930.1 68418.m01863 plant adhesion molecule 1 (PAM1) identi... 36 0.060
At5g57210.1 68418.m07147 microtubule-associated protein-related ... 32 0.73
At2g19240.1 68415.m02246 RabGAP/TBC domain-containing protein lo... 32 0.73
At3g02460.2 68416.m00234 plant adhesion molecule, putative stron... 31 0.97
At3g02460.1 68416.m00233 plant adhesion molecule, putative stron... 31 0.97
At3g07890.1 68416.m00964 RabGAP/TBC domain-containing protein si... 31 1.3
At3g55020.1 68416.m06110 RabGAP/TBC domain-containing protein lo... 31 1.7
At2g39280.1 68415.m04823 RabGAP/TBC domain-containing protein co... 30 3.0
At2g37290.1 68415.m04574 RabGAP/TBC domain-containing protein lo... 29 5.2
At3g01660.1 68416.m00097 expressed protein similar to putative p... 29 6.8
>At3g59570.1 68416.m06647 RabGAP/TBC domain-containing protein
similar to GTPase activating protein [Yarrowia
lipolytica] GI:2370595; contains Pfam profile PF00566:
TBC domain
Length = 720
Score = 37.9 bits (84), Expect = 0.011
Identities = 21/105 (20%), Positives = 45/105 (42%), Gaps = 2/105 (1%)
Query: 225 GFTMYATPFCYLYDDPVQLYYTFRAFYIRYWHRLHYISTHPQGIVSLCLLYERLLEANEP 284
G + +PF +L++D ++ F R R ++ P G++ R+L+ +
Sbjct: 408 GMSDLVSPFVFLFEDNADAFWCFEMLIRRT--RANFQMEGPTGVMDQLQSLWRILQLTDK 465
Query: 285 LLWIHFRNININPIRVVFKWLMRAFSGHLPPDQLLLLWDAILGYD 329
++ H I + F+ L+ F L ++ L +W+ + D
Sbjct: 466 EMFSHLSRIGAESLHFAFRMLLVLFRRELSFNKALRMWEMMWAAD 510
>At5g15930.1 68418.m01863 plant adhesion molecule 1 (PAM1) identical
to plant adhesion molecule 1 [Arabidopsis thaliana]
GI:3511223; contains Pfam profile PF00566: TBC domain
Length = 356
Score = 35.5 bits (78), Expect = 0.060
Identities = 18/54 (33%), Positives = 25/54 (46%)
Query: 273 LLYERLLEANEPLLWIHFRNININPIRVVFKWLMRAFSGHLPPDQLLLLWDAIL 326
L +++L+ P L HF INP +W + FS LP L +WD L
Sbjct: 220 LQFDQLVRELMPKLGEHFTQEMINPSMYASQWFITVFSYSLPFHSALRIWDVFL 273
Score = 29.5 bits (63), Expect = 3.9
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 100 VVQEYLKKGSPQCLRAKLWAQVLGS 124
VV+ ++KG P CLR +W + GS
Sbjct: 77 VVKRRIRKGIPDCLRGLVWQLISGS 101
>At5g57210.1 68418.m07147 microtubule-associated protein-related
contains some similarity to microtubule-associated
protein GI:5032258 from [Arabidopsis thaliana]; contains
Pfam profile PF00566: TBC domain
Length = 737
Score = 31.9 bits (69), Expect = 0.73
Identities = 15/52 (28%), Positives = 21/52 (40%)
Query: 278 LLEANEPLLWIHFRNININPIRVVFKWLMRAFSGHLPPDQLLLLWDAILGYD 329
LL + L H + + P +WL F P LL++WD I D
Sbjct: 324 LLSLVDASLHSHLVELGVEPQYFALRWLRVLFGREFPLSNLLIVWDEIFSAD 375
>At2g19240.1 68415.m02246 RabGAP/TBC domain-containing protein low
similarity to SP|Q08484 GTPase-activating protein GYP1
{Saccharomyces cerevisiae}; contains Pfam profile
PF00566: TBC domain
Length = 840
Score = 31.9 bits (69), Expect = 0.73
Identities = 15/59 (25%), Positives = 25/59 (42%)
Query: 268 IVSLCLLYERLLEANEPLLWIHFRNININPIRVVFKWLMRAFSGHLPPDQLLLLWDAIL 326
++ C + R+L + L H + + P +WL F LLL+WD I+
Sbjct: 295 VLEACSAFYRILAVVDSSLHSHLVELGVEPQYFGLRWLRVLFGREFLLQDLLLVWDEII 353
>At3g02460.2 68416.m00234 plant adhesion molecule, putative strong
similarity to plant adhesion molecule 1 [Arabidopsis
thaliana] GI:3511223; contains Pfam profile PF00566: TBC
domain
Length = 333
Score = 31.5 bits (68), Expect = 0.97
Identities = 17/51 (33%), Positives = 22/51 (43%)
Query: 276 ERLLEANEPLLWIHFRNININPIRVVFKWLMRAFSGHLPPDQLLLLWDAIL 326
E L++ P L HF INP +W + FS P L +WD L
Sbjct: 226 ESLVKELIPKLGEHFTQEMINPSMYASQWFITVFSYSFPFPLALRIWDVFL 276
Score = 29.5 bits (63), Expect = 3.9
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 100 VVQEYLKKGSPQCLRAKLWAQVLGS 124
VV+ ++KG P CLR +W + GS
Sbjct: 80 VVRRRIRKGIPDCLRGLVWQLISGS 104
>At3g02460.1 68416.m00233 plant adhesion molecule, putative strong
similarity to plant adhesion molecule 1 [Arabidopsis
thaliana] GI:3511223; contains Pfam profile PF00566: TBC
domain
Length = 353
Score = 31.5 bits (68), Expect = 0.97
Identities = 17/51 (33%), Positives = 22/51 (43%)
Query: 276 ERLLEANEPLLWIHFRNININPIRVVFKWLMRAFSGHLPPDQLLLLWDAIL 326
E L++ P L HF INP +W + FS P L +WD L
Sbjct: 226 ESLVKELIPKLGEHFTQEMINPSMYASQWFITVFSYSFPFPLALRIWDVFL 276
Score = 29.5 bits (63), Expect = 3.9
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 100 VVQEYLKKGSPQCLRAKLWAQVLGS 124
VV+ ++KG P CLR +W + GS
Sbjct: 80 VVRRRIRKGIPDCLRGLVWQLISGS 104
>At3g07890.1 68416.m00964 RabGAP/TBC domain-containing protein
similar to plant adhesion molecule 1 [Arabidopsis
thaliana] GI:3511223; contains Pfam profile PF00566: TBC
domain
Length = 400
Score = 31.1 bits (67), Expect = 1.3
Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 4/86 (4%)
Query: 58 WSSGEPLLGANPHMASAVPGFVTLEAERVSLGERVAALGYAPVVQEYLKKGSPQCLRAKL 117
W + E GAN ++ + A + SL +++ L A ++ ++KG P LR K+
Sbjct: 68 WWALEASKGANWYLQPEILLIGDGIALKTSL--KLSTLTNAITLKRLIRKGIPPVLRPKV 125
Query: 118 WAQVLGSEIKGQQI--TYFNQLKKSV 141
W + G+ K + +Y++ L K+V
Sbjct: 126 WFSLSGAAKKKSTVPESYYSDLTKAV 151
>At3g55020.1 68416.m06110 RabGAP/TBC domain-containing protein low
similarity to SP|Q9BXI6 EBP50-PDZ interactor of 64 kDa
(EPI64 protein) {Homo sapiens}; contains Pfam profile
PF00566: TBC domain
Length = 777
Score = 30.7 bits (66), Expect = 1.7
Identities = 15/54 (27%), Positives = 24/54 (44%)
Query: 273 LLYERLLEANEPLLWIHFRNININPIRVVFKWLMRAFSGHLPPDQLLLLWDAIL 326
L+ E L+ P L H + + V W + F LP + +L +WD +L
Sbjct: 396 LVLEELVRERFPKLVHHLDYLGVQVAWVTGPWFLSIFMNMLPWESVLRVWDVLL 449
>At2g39280.1 68415.m04823 RabGAP/TBC domain-containing protein
contains Pfam profile PF00566: TBC domain
Length = 771
Score = 29.9 bits (64), Expect = 3.0
Identities = 15/51 (29%), Positives = 22/51 (43%)
Query: 276 ERLLEANEPLLWIHFRNININPIRVVFKWLMRAFSGHLPPDQLLLLWDAIL 326
E LL P L H + + V W + F LP + +L +WD +L
Sbjct: 386 EELLRERFPKLVHHLDYLGVQVACVTGPWFLTIFINMLPWESVLRVWDVLL 436
>At2g37290.1 68415.m04574 RabGAP/TBC domain-containing protein low
similarity to Rab6 GTPase activating protein, GAPCenA
[Homo sapiens] GI:12188746; contains Pfam profile
PF00566: TBC domain
Length = 882
Score = 29.1 bits (62), Expect = 5.2
Identities = 13/54 (24%), Positives = 25/54 (46%)
Query: 273 LLYERLLEANEPLLWIHFRNININPIRVVFKWLMRAFSGHLPPDQLLLLWDAIL 326
L++E L+ P L H + + + W + F +P + +L +WD +L
Sbjct: 453 LVFEELMRERFPKLVNHLDYLGVQVAWISGPWFLSIFVNIIPWECVLRMWDVLL 506
>At3g01660.1 68416.m00097 expressed protein similar to putative
protein GB:CAB45319 [Arabidopsis thaliana]
Length = 273
Score = 28.7 bits (61), Expect = 6.8
Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 6/75 (8%)
Query: 105 LKKGSPQCLRAKLWAQVLGSEIKGQQITYFNQLKKSVLEVDLMIDKLIFKDVQLTASNDD 164
L+ GS W L E+K +++ L L + +D KD+ N+D
Sbjct: 92 LRPGSTVLDLMSSWVSHLPEEVKYEKVVGHG-LNAQELARNPRLDYFFVKDL-----NED 145
Query: 165 QYFVFEDVLYQVMLC 179
Q F FED + +LC
Sbjct: 146 QKFEFEDKYFDAVLC 160
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.324 0.139 0.424
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,639,987
Number of Sequences: 28952
Number of extensions: 351586
Number of successful extensions: 1033
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1019
Number of HSP's gapped (non-prelim): 17
length of query: 381
length of database: 12,070,560
effective HSP length: 82
effective length of query: 299
effective length of database: 9,696,496
effective search space: 2899252304
effective search space used: 2899252304
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 60 (28.3 bits)
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