Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001100-TA|BGIBMGA001100-PA|IPR000980|SH2 motif,
IPR000242|Tyrosine specific protein phosphatase, IPR000387|Tyrosine
specific protein phosphatase and dual specificity protein phosphatase,
IPR003595|Protein tyrosine phosphatase, catalytic region
         (598 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    30   0.040
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    27   0.49 

>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 30.3 bits (65), Expect = 0.040
 Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 4/54 (7%)

Query: 289 GKDGTPSKAKDKSSPVHTSVIVT--EEPVK-SSKKVHGNGTHKLPAFEPSVLRP 339
           GK   P+K+  +SSPV + V ++   EP+  +++K+   G  KLP  +P + +P
Sbjct: 219 GKFEVPTKSSPRSSPVQSDVSLSPVHEPLLITTEKLAAEGQTKLPQ-QPKLFKP 271


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 26.6 bits (56), Expect = 0.49
 Identities = 12/35 (34%), Positives = 16/35 (45%)

Query: 491 IMTGTDPPAQAVVCVHCSAGIGRTGTFIVIDMILD 525
           I TG  PP   V  +H    IG+    +VI   L+
Sbjct: 122 IETGNKPPTLPVTSIHLRGAIGQRSCQVVIQCYLE 156


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.318    0.135    0.406 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,483
Number of Sequences: 317
Number of extensions: 6840
Number of successful extensions: 10
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 9
Number of HSP's gapped (non-prelim): 2
length of query: 598
length of database: 114,650
effective HSP length: 61
effective length of query: 537
effective length of database: 95,313
effective search space: 51183081
effective search space used: 51183081
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 46 (22.6 bits)