Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001100-TA|BGIBMGA001100-PA|IPR000980|SH2 motif,
IPR000242|Tyrosine specific protein phosphatase, IPR000387|Tyrosine
specific protein phosphatase and dual specificity protein phosphatase,
IPR003595|Protein tyrosine phosphatase, catalytic region
(598 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0482 - 3791630-3791698,3791983-3792124,3792202-3792344,379... 102 7e-22
11_01_0514 - 3985204-3985266,3985920-3986061,3986144-3986276,398... 66 8e-11
04_01_0392 + 5149981-5150014,5150124-5150188,5150572-5150868 31 2.0
08_01_0720 + 6393537-6393644,6395706-6395775,6395852-6395937,639... 31 2.6
04_04_0706 + 27419215-27419371,27419521-27419734,27419818-274199... 31 2.6
07_03_0521 + 19016824-19017000,19017064-19017099,19017860-190186... 31 3.5
01_01_0055 - 415666-415767,416510-416602,416776-416850,416920-41... 30 4.6
11_06_0616 + 25546175-25546359,25546778-25546837,25546939-255469... 30 6.0
09_04_0593 - 18825741-18826702,18826994-18827875,18828687-188287... 30 6.0
06_02_0179 + 12668623-12669591 30 6.0
10_08_1006 - 22194013-22196054,22197357-22198337,22198974-22199301 29 8.0
08_02_0010 - 11230407-11232416 29 8.0
08_02_0009 + 11216532-11218687,11220727-11225998 29 8.0
08_02_0006 + 11204835-11206382 29 8.0
08_02_0003 + 11180421-11180757,11180773-11185715 29 8.0
08_02_0002 + 11173365-11173512,11173528-11178470 29 8.0
08_01_1086 - 11150017-11151564 29 8.0
04_03_0955 + 21215380-21215991,21216058-21216639 29 8.0
>12_01_0482 -
3791630-3791698,3791983-3792124,3792202-3792344,
3792833-3792958,3794307-3794444,3794540-3794622,
3794738-3794825,3796147-3796344
Length = 328
Score = 102 bits (245), Expect = 7e-22
Identities = 63/201 (31%), Positives = 101/201 (50%), Gaps = 16/201 (7%)
Query: 369 YIATQGCLSTTIYPFWSMIWQEDVRIIIMTTKEIERGKVKCERYWPDLNKTEVVKKYTI- 427
+I+TQG L+ T FW M+++ +I+M T + +KC+ Y P + E KY +
Sbjct: 133 FISTQGPLAKTFDDFWEMVYEYQCPVIVMLT---QFDSLKCDEYLPLRKQREAYGKYNVK 189
Query: 428 LNEFESSTPDYTLRRFLVTKKDETTVKRTIYHFHFTAWPDHRVPSEPGRVLNILLDVNYR 487
+ + + LR +V + + V ++ H + WPDH VP+ V I
Sbjct: 190 ITNAKRDSHQLWLRDVMVQCNESSRV-HSVRHIEYPDWPDHGVPTNTDAVRQI------- 241
Query: 488 LQQIMTGTDPPAQAVVCVHCSAGIGRTGTFIVIDMILDQIRKEGFDCEIDIHRTVQMVRD 547
++ + T P + + VHCSAGIGRTG +I I ++++ G + TV+ +R
Sbjct: 242 -RKWLQNT--PMEHPIVVHCSAGIGRTGAYITIHSTIERLLL-GDKSSYHLDETVKTLRT 297
Query: 548 QRSGMVQNEAQYKFIYMAVLE 568
QR GMVQ E QY F Y A+ +
Sbjct: 298 QRVGMVQTEKQYMFCYRAIAD 318
Score = 46.8 bits (106), Expect = 5e-05
Identities = 24/64 (37%), Positives = 34/64 (53%)
Query: 204 EEFETLQMMENLQLFDRMEGSKPENIRKNRYKNIIPFDHTRVILKDIPPDGPPGSDYINA 263
+EF LQ + + E N KNRY +++PFD TRV LK +DYINA
Sbjct: 60 DEFRRLQDTRHELMRSSNEARNAANREKNRYIDVVPFDTTRVRLKRSTTSQTSSNDYINA 119
Query: 264 NYIR 267
++I+
Sbjct: 120 SFIK 123
>11_01_0514 -
3985204-3985266,3985920-3986061,3986144-3986276,
3986703-3986817,3987496-3987549,3987787-3987912,
3989179-3989319,3989470-3989552,3989643-3989733,
3990318-3990405,3992705-3992832
Length = 387
Score = 66.1 bits (154), Expect = 8e-11
Identities = 41/104 (39%), Positives = 55/104 (52%), Gaps = 11/104 (10%)
Query: 455 RTIYHFHFTAWPDHRVPSEPGRVLNILLDVNYRLQQIMTGTDPPAQAVVCVHCSAGIGRT 514
R + H ++ WPDH VP + V IL RL I P + + HCSAGIGRT
Sbjct: 277 RHVLHILYSDWPDHGVPHDSAFVRKILK----RLYGI------PKEHPIVAHCSAGIGRT 326
Query: 515 GTFIVIDMILDQIRKEGFDCEIDIHRTVQMVRDQRSGMVQNEAQ 558
G +I I +++I G +D+ +TV+ R QR GMVQ E Q
Sbjct: 327 GAYITIHNTIERILL-GDMSALDLSKTVKKFRSQRPGMVQTEEQ 369
Score = 50.0 bits (114), Expect = 5e-06
Identities = 22/44 (50%), Positives = 28/44 (63%)
Query: 226 PENIRKNRYKNIIPFDHTRVILKDIPPDGPPGSDYINANYIRCD 269
P N KNRY +++PFD TRV LK D P ++YINA+ I D
Sbjct: 89 PANREKNRYSDVMPFDETRVRLKPSASDHPSSNEYINASLIETD 132
Score = 38.7 bits (86), Expect = 0.013
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 369 YIATQGCLSTTIYPFWSMIWQEDVRIIIMTTKEIERGKVKCERYWP 414
+I+TQG L T FW M+++ +I+M TK KC+RY P
Sbjct: 141 FISTQGPLVKTFGDFWQMVYENQCPVIVMVTK---FDGAKCDRYLP 183
>04_01_0392 + 5149981-5150014,5150124-5150188,5150572-5150868
Length = 131
Score = 31.5 bits (68), Expect = 2.0
Identities = 14/59 (23%), Positives = 29/59 (49%)
Query: 506 HCSAGIGRTGTFIVIDMILDQIRKEGFDCEIDIHRTVQMVRDQRSGMVQNEAQYKFIYM 564
+C + G IV+D++L + K + + + V M+ + R G ++ E +Y + M
Sbjct: 49 NCHYALSDNGKVIVVDIVLPETPKPVPEAQNPLRMDVMMLNNLRGGKIRTEQEYAKLAM 107
>08_01_0720 +
6393537-6393644,6395706-6395775,6395852-6395937,
6396618-6396638,6397154-6397201,6397333-6397410
Length = 136
Score = 31.1 bits (67), Expect = 2.6
Identities = 13/52 (25%), Positives = 26/52 (50%)
Query: 414 PDLNKTEVVKKYTILNEFESSTPDYTLRRFLVTKKDETTVKRTIYHFHFTAW 465
P+ + +V+ TI+ +PDY + + + +T K T+ + +FT W
Sbjct: 34 PNSHDVPMVELETIIKALPGDSPDYYAFQVEIKNEGQTMPKYTVSYINFTLW 85
>04_04_0706 +
27419215-27419371,27419521-27419734,27419818-27419913,
27420006-27420123,27420211-27420384,27420633-27420803,
27420932-27420987,27421125-27421214,27421296-27421444,
27421640-27421722,27421830-27421958,27422063-27422137,
27422248-27422416,27422965-27423104,27423191-27423298,
27423603-27423783,27424445-27424542,27424639-27424728,
27424881-27425034,27425376-27425431,27425483-27425533,
27425651-27425732,27425821-27425995,27426748-27426823,
27426951-27427121,27427198-27427269,27427350-27427454,
27427948-27428037,27428703-27428908,27428989-27429190,
27429294-27429473,27429858-27429925,27430005-27430341,
27430428-27430637,27430765-27431448,27431537-27431940,
27432495-27432542,27432777-27433023,27433381-27433602,
27433796-27434026
Length = 2122
Score = 31.1 bits (67), Expect = 2.6
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 203 WEEFETLQMMENLQLFDRMEGSKPENIRKNRYKNIIPFDHT 243
WE + + ++ N+ D+M+G PE++ KNI F T
Sbjct: 624 WEFYTSSSLVYNVITTDKMKGISPESVASINMKNIKAFSET 664
>07_03_0521 +
19016824-19017000,19017064-19017099,19017860-19018624,
19018772-19018864,19018944-19019114,19019206-19019397,
19019443-19019530,19019617-19019685,19019841-19020054,
19020136-19020334,19020406-19020504,19020594-19020850,
19020927-19021002,19021091-19021204
Length = 849
Score = 30.7 bits (66), Expect = 3.5
Identities = 14/48 (29%), Positives = 25/48 (52%)
Query: 245 VILKDIPPDGPPGSDYINANYIRCDSMDSISDSQEFTGNGSTENGKDG 292
+IL+D+PP G PG++ I+ C S + + S+ + G + G
Sbjct: 15 IILEDLPPVGVPGAEVIDLESPECKSGAAGAKSRSHSSTGHPKQQSHG 62
>01_01_0055 -
415666-415767,416510-416602,416776-416850,416920-417071,
417147-417267,417567-418289,418408-418489,418575-418681,
418757-418822,418941-419057,419157-419402
Length = 627
Score = 30.3 bits (65), Expect = 4.6
Identities = 34/130 (26%), Positives = 61/130 (46%), Gaps = 14/130 (10%)
Query: 186 QKENEGPIESMAYKQGFWEEFE---TLQMMENLQLFDRMEG----SKPENIRK--NRYKN 236
++ENE +ES A +G +E TL+ E+++ ++ G S E ++ N +K+
Sbjct: 232 KEENESSLESSAISEGITDEANTDTTLKGDEDVEDKEQDVGNAKDSSVEGLKSVLNFFKS 291
Query: 237 IIPFDHTRVILKDIPPDGPPGSD---YINANYIRCDSMDSISDSQEFTGNGSTENGKDGT 293
IP +VI D+ + SD + + ++ S +S+ DS T ++ DG
Sbjct: 292 RIPEFKVQVINVDVSEEAELASDSSEELVQDDVKSTSENSLEDST--TEELQQDDVPDGD 349
Query: 294 PSKAKDKSSP 303
A+D SP
Sbjct: 350 SDSAEDSKSP 359
>11_06_0616 +
25546175-25546359,25546778-25546837,25546939-25546957,
25547948-25547998,25548097-25548230,25548558-25548948,
25549840-25549890
Length = 296
Score = 29.9 bits (64), Expect = 6.0
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 7/62 (11%)
Query: 63 LDLYGDPTTERWYHGQLTAKEAERMMMENGKN-------GSFLVRESQSQPGDFVLSVRT 115
L L GDP T W+HG A+ + MM+ + G QS PG F + ++
Sbjct: 114 LGLTGDPNTSSWFHGGGGAEAQQPMMLPEDPSLLHQRDIGCSASTSLQSYPGYFSMGKQS 173
Query: 116 RD 117
D
Sbjct: 174 TD 175
>09_04_0593 -
18825741-18826702,18826994-18827875,18828687-18828775,
18828942-18829080,18829405-18829531,18829629-18829838
Length = 802
Score = 29.9 bits (64), Expect = 6.0
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 269 DSMDSISDSQEF---TGNGSTENGKDGTPSKAKDKSSPVHTSVIVTEEPVKSSKKVHGNG 325
+ D I D EF TG+G+ +GK P A S+P S +++ K +++ +G
Sbjct: 686 EDQDQIKDEPEFRAFTGSGNRLDGKASKPLAAGISSNPAAASSAISDSNKKVNQETAASG 745
>06_02_0179 + 12668623-12669591
Length = 322
Score = 29.9 bits (64), Expect = 6.0
Identities = 20/86 (23%), Positives = 40/86 (46%), Gaps = 4/86 (4%)
Query: 229 IRKNRYKNIIPFDHTRVILKDIPPDGPPGSDY-INANYIRCDSMDSISDSQEFTGNGSTE 287
+R +++ + P + + PD PG+D + +++ +M + DS +G+G
Sbjct: 23 LRAQQHQPLSPAGDVKAERSMLSPDESPGADADLGSDHPTSSAMVAAEDSGGGSGSGGPM 82
Query: 288 NGKDGTPSKAKDKSSPVHTSVIVTEE 313
G P +K+K P +IVT +
Sbjct: 83 RRPRGRPLGSKNKPKP---PIIVTRD 105
>10_08_1006 - 22194013-22196054,22197357-22198337,22198974-22199301
Length = 1116
Score = 29.5 bits (63), Expect = 8.0
Identities = 29/142 (20%), Positives = 52/142 (36%), Gaps = 5/142 (3%)
Query: 229 IRKNRYKNIIPFDHTRVILKDIPPDGPPGSDYINANYI-RCDSMDSISDSQEFTGNGSTE 287
I R++N+ ++H + L+ I G S Y + I + D +++ D G+G
Sbjct: 908 INLQRFRNLPTYNHEEISLQTIIDHGLVNSIYATLDQILQSDLGNAVKDVCRRLGHGRYR 967
Query: 288 NGKDGTPSKAKDKSSPVHTSVIVTEEPVKSSKKVHGNGTHKLPAFEPSVLRPNPNYFNTT 347
P K P + + +K +G KL E + N+ N
Sbjct: 968 IIFSSIPPKFTPPVRPAIHYIYI----MKGQFNFQEDGPSKLSDEEEEIYTTVANHENWR 1023
Query: 348 IPKSATETENGVPTVHVYNKTY 369
+ A E E + T + Y +
Sbjct: 1024 LFSEAAEIEEAITTDYEYQLVF 1045
>08_02_0010 - 11230407-11232416
Length = 669
Score = 29.5 bits (63), Expect = 8.0
Identities = 29/142 (20%), Positives = 52/142 (36%), Gaps = 5/142 (3%)
Query: 229 IRKNRYKNIIPFDHTRVILKDIPPDGPPGSDYINANYI-RCDSMDSISDSQEFTGNGSTE 287
I R++N+ ++H + L+ I G S Y + I + D +++ D G+G
Sbjct: 461 INLQRFRNLPTYNHEEISLQTIIDHGLVNSIYATLDQILQSDLGNAVKDVCRRLGHGRYR 520
Query: 288 NGKDGTPSKAKDKSSPVHTSVIVTEEPVKSSKKVHGNGTHKLPAFEPSVLRPNPNYFNTT 347
P K P + + +K +G KL E + N+ N
Sbjct: 521 IIFSSIPPKFTPPVRPAIHYIYI----MKGQFNFQEDGLSKLSDEEEEIYTTVANHENWR 576
Query: 348 IPKSATETENGVPTVHVYNKTY 369
+ A E E + T + Y +
Sbjct: 577 LFSEAAEIEEAITTDYEYQLVF 598
>08_02_0009 + 11216532-11218687,11220727-11225998
Length = 2475
Score = 29.5 bits (63), Expect = 8.0
Identities = 29/142 (20%), Positives = 52/142 (36%), Gaps = 5/142 (3%)
Query: 229 IRKNRYKNIIPFDHTRVILKDIPPDGPPGSDYINANYI-RCDSMDSISDSQEFTGNGSTE 287
I R++N+ ++H + L+ I G S Y + I + D +++ D G+G
Sbjct: 2267 INLQRFRNLPTYNHEEISLQTIIDHGLVNSIYATLDQILQSDLGNAVKDVCRRLGHGRYR 2326
Query: 288 NGKDGTPSKAKDKSSPVHTSVIVTEEPVKSSKKVHGNGTHKLPAFEPSVLRPNPNYFNTT 347
P K P + + +K +G KL E + N+ N
Sbjct: 2327 IIFSSIPPKFTPPVRPAIHYIYI----MKGQFNFQEDGLSKLSDEEEEIYTTVANHENWR 2382
Query: 348 IPKSATETENGVPTVHVYNKTY 369
+ A E E + T + Y +
Sbjct: 2383 LFSEAAEIEEAITTDYEYQLVF 2404
>08_02_0006 + 11204835-11206382
Length = 515
Score = 29.5 bits (63), Expect = 8.0
Identities = 29/142 (20%), Positives = 52/142 (36%), Gaps = 5/142 (3%)
Query: 229 IRKNRYKNIIPFDHTRVILKDIPPDGPPGSDYINANYI-RCDSMDSISDSQEFTGNGSTE 287
I R++N+ ++H + L+ I G S Y + I + D +++ D G+G
Sbjct: 307 INLQRFRNLPTYNHEEISLQTIIDHGLVNSIYATLDQILQSDLGNAVKDVCRRLGHGRYR 366
Query: 288 NGKDGTPSKAKDKSSPVHTSVIVTEEPVKSSKKVHGNGTHKLPAFEPSVLRPNPNYFNTT 347
P K P + + +K +G KL E + N+ N
Sbjct: 367 IIFSSIPPKFTPPVRPAIHYIYI----MKGQFNFQEDGLSKLSDEEEEIYTTVANHENWR 422
Query: 348 IPKSATETENGVPTVHVYNKTY 369
+ A E E + T + Y +
Sbjct: 423 LFSEAAEIEEAITTDYEYQLVF 444
>08_02_0003 + 11180421-11180757,11180773-11185715
Length = 1759
Score = 29.5 bits (63), Expect = 8.0
Identities = 29/142 (20%), Positives = 52/142 (36%), Gaps = 5/142 (3%)
Query: 229 IRKNRYKNIIPFDHTRVILKDIPPDGPPGSDYINANYI-RCDSMDSISDSQEFTGNGSTE 287
I R++N+ ++H + L+ I G S Y + I + D +++ D G+G
Sbjct: 1551 INLQRFRNLPTYNHEEISLQTIIDHGLVNSIYATLDQILQSDLGNAVKDVCRRLGHGRYR 1610
Query: 288 NGKDGTPSKAKDKSSPVHTSVIVTEEPVKSSKKVHGNGTHKLPAFEPSVLRPNPNYFNTT 347
P K P + + +K +G KL E + N+ N
Sbjct: 1611 IIFSSIPPKFTPPVRPAIHYIYI----MKGQFNFQEDGLSKLSDEEEEIYTTVANHENWR 1666
Query: 348 IPKSATETENGVPTVHVYNKTY 369
+ A E E + T + Y +
Sbjct: 1667 LFSEAAEIEEAITTDYEYQLVF 1688
>08_02_0002 + 11173365-11173512,11173528-11178470
Length = 1696
Score = 29.5 bits (63), Expect = 8.0
Identities = 29/142 (20%), Positives = 52/142 (36%), Gaps = 5/142 (3%)
Query: 229 IRKNRYKNIIPFDHTRVILKDIPPDGPPGSDYINANYI-RCDSMDSISDSQEFTGNGSTE 287
I R++N+ ++H + L+ I G S Y + I + D +++ D G+G
Sbjct: 1488 INLQRFRNLPTYNHEEISLQTIIDHGLVNSIYATLDQILQSDLGNAVKDVCRRLGHGRYR 1547
Query: 288 NGKDGTPSKAKDKSSPVHTSVIVTEEPVKSSKKVHGNGTHKLPAFEPSVLRPNPNYFNTT 347
P K P + + +K +G KL E + N+ N
Sbjct: 1548 IIFSSIPPKFTPPVRPAIHYIYI----MKGQFNFQEDGLSKLSDEEEEIYTTVANHENWR 1603
Query: 348 IPKSATETENGVPTVHVYNKTY 369
+ A E E + T + Y +
Sbjct: 1604 LFSEAAEIEEAITTDYEYQLVF 1625
>08_01_1086 - 11150017-11151564
Length = 515
Score = 29.5 bits (63), Expect = 8.0
Identities = 29/142 (20%), Positives = 52/142 (36%), Gaps = 5/142 (3%)
Query: 229 IRKNRYKNIIPFDHTRVILKDIPPDGPPGSDYINANYI-RCDSMDSISDSQEFTGNGSTE 287
I R++N+ ++H + L+ I G S Y + I + D +++ D G+G
Sbjct: 307 INLQRFRNLPTYNHEEISLQTIIDHGLVNSIYATLDQILQSDLGNAVEDVCRRLGHGRYR 366
Query: 288 NGKDGTPSKAKDKSSPVHTSVIVTEEPVKSSKKVHGNGTHKLPAFEPSVLRPNPNYFNTT 347
P K P + + +K +G KL E + N+ N
Sbjct: 367 IIFSSIPPKFTPPVRPAIHYIYI----MKGQFNFQEDGLSKLSDEEEEIYTTVANHENWR 422
Query: 348 IPKSATETENGVPTVHVYNKTY 369
+ A E E + T + Y +
Sbjct: 423 LFSEAAEIEEAITTDYEYQLVF 444
>04_03_0955 + 21215380-21215991,21216058-21216639
Length = 397
Score = 29.5 bits (63), Expect = 8.0
Identities = 23/99 (23%), Positives = 44/99 (44%), Gaps = 14/99 (14%)
Query: 193 IESMAYKQGFWEEFETLQMMENLQLFDRMEGSKPENIRKNRYKNIIPFDHTRVILKDIPP 252
++S G W+EF+ L+ +D ++G + NI ++ F+ TR+
Sbjct: 258 LDSKPQLVGTWKEFDPLED------WDLLQGPQLVNIGSGKFCIARFFNTTRISYY---- 307
Query: 253 DGPPGSDYINANYIRCDSMDSISDSQEFTGNGSTENGKD 291
G D+I+ + ++ + + + GNGS GKD
Sbjct: 308 ----GDDFIDQTFAIITGVEVVPRTYQGNGNGSANGGKD 342
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.135 0.406
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,567,595
Number of Sequences: 37544
Number of extensions: 830424
Number of successful extensions: 1802
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1787
Number of HSP's gapped (non-prelim): 22
length of query: 598
length of database: 14,793,348
effective HSP length: 86
effective length of query: 512
effective length of database: 11,564,564
effective search space: 5921056768
effective search space used: 5921056768
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 63 (29.5 bits)
- SilkBase 1999-2023 -