Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001100-TA|BGIBMGA001100-PA|IPR000980|SH2 motif,
IPR000242|Tyrosine specific protein phosphatase, IPR000387|Tyrosine
specific protein phosphatase and dual specificity protein phosphatase,
IPR003595|Protein tyrosine phosphatase, catalytic region
(598 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC11E3.09 |pyp3||protein-tyrosine phosphatase Pyp3|Schizosacch... 100 5e-22
SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyce... 99 9e-22
SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces... 89 2e-18
SPAC3C7.06c |pit1||serine/threonine protein kinase Pit1|Schizosa... 33 0.11
SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces ... 33 0.15
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam... 32 0.20
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual 32 0.26
SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase Clp1/F... 30 0.80
SPBC31F10.08 |mde2||Mde2 protein|Schizosaccharomyces pombe|chr 2... 30 1.1
SPAC31G5.15 |||phosphatidylserine decarboxylase |Schizosaccharom... 29 1.4
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc... 29 1.8
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo... 29 2.4
SPAC23A1.04c |mnl1||alpha mannosidase-like protein|Schizosacchar... 28 4.2
SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces ... 28 4.2
SPBC609.02 |ptn1||phosphatidylinositol-3,4,5-trisphosphate3-phos... 27 5.6
SPAC1071.04c |||signal peptidase subunit |Schizosaccharomyces po... 27 5.6
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf... 27 5.6
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic... 27 9.8
SPCC11E10.04 |||mitochondrial ATPase expression protein homolog|... 27 9.8
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 27 9.8
SPAC32A11.04c |tif212|tif22, SPAC6B12.17c|translation initiation... 27 9.8
SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor Mc... 27 9.8
SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe... 27 9.8
>SPAC11E3.09 |pyp3||protein-tyrosine phosphatase
Pyp3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 303
Score = 100 bits (240), Expect = 5e-22
Identities = 87/275 (31%), Positives = 127/275 (46%), Gaps = 34/275 (12%)
Query: 311 TEEPVKSSKKVHGNGTHKLPAFEPSVLRPNPNYFNTTIPKSATETENGVPTVHVYNKTYI 370
T P S K + N + +E + +R +P + K A + N KT+I
Sbjct: 40 TRLPKLSKKALARNRYSNIVPYENTRVRLDPMW------KEACDYINASIVKIPSGKTFI 93
Query: 371 ATQGCLSTTIYPFWSMIWQEDVR--IIIMTTKEIERGKVKCERYWP-----DLNKTEV-- 421
ATQG S +I FW M+WQ + II+M TK ER ++KC+ YWP LN ++
Sbjct: 94 ATQGPTSNSIDVFWKMVWQSVPKSGIIVMLTKLRERHRLKCDIYWPVELFETLNIGDLSV 153
Query: 422 --VKKYTILNEFESSTPDYTLRRFLVTKKDETTVKRTIYHFHFTAWPDHRVPSEPGRVLN 479
VK YT+ +S + +R F + K VK+ I HF++ WPD P
Sbjct: 154 ILVKVYTL-----TSLNEVQVREFELNKDG---VKKKILHFYYNGWPDFGAPHTFS---- 201
Query: 480 ILLDVNYRLQQIMTGTDPPAQAVVCVHCSAGIGRTGTFIVIDMILDQI--RKEGFDCEID 537
LL + ++ + D ++ VHCSAG GRTGTF+ + IL Q E+D
Sbjct: 202 -LLSLTRYIKSLSYSPDFETAPII-VHCSAGCGRTGTFMALFEILSQTDDSTSTSKFEVD 259
Query: 538 -IHRTVQMVRDQRSGMVQNEAQYKFIYMAVLEFIE 571
I V +R QR VQ+ Q F+Y E ++
Sbjct: 260 NIANIVSSLRSQRMQSVQSVDQLVFLYTVSQELLQ 294
Score = 39.9 bits (89), Expect = 0.001
Identities = 29/101 (28%), Positives = 47/101 (46%), Gaps = 3/101 (2%)
Query: 183 KQLQKENEGPIESMAYKQGFWEEFETLQMMENLQLFDRMEGSKPENIRKNRYKNIIPFDH 242
K++ EN + K+ + E L E L R+ + + +NRY NI+P+++
Sbjct: 4 KEVSTENGVLTPLITIKEKAYMIIEGLNEEEIELLNTRLPKLSKKALARNRYSNIVPYEN 63
Query: 243 TRVILKDIPPDGPPGSDYINANYIRCDSMDSISDSQEFTGN 283
TRV L P DYINA+ ++ S + +Q T N
Sbjct: 64 TRVRL---DPMWKEACDYINASIVKIPSGKTFIATQGPTSN 101
>SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 550
Score = 99 bits (238), Expect = 9e-22
Identities = 65/208 (31%), Positives = 100/208 (48%), Gaps = 24/208 (11%)
Query: 369 YIATQGCLSTTIYPFWSMIWQ--EDVRIIIMTTKEIERGKVKCERYWPD--LNKTEVVKK 424
YIA QG +S +I FW M+W E++ I+M E G+ C YWP + +V
Sbjct: 337 YIACQGSISRSISDFWHMVWDNVENIGTIVMLGSLFEAGREMCTAYWPSNGIGDKQVYGD 396
Query: 425 YTI--LNEFESSTPDYTLRRFLVTKKDETTVKRTIYHFHFTAWPDHRVPSEPGRVLNILL 482
Y + ++E + LR+F + + +VK+ ++H+ + W D P ++ L
Sbjct: 397 YCVKQISEENVDNSRFILRKFEIQNANFPSVKK-VHHYQYPNWSDCNSPENVKSMVEFLK 455
Query: 483 DVNYRLQQIMTGTDPPAQAVVCVHCSAGIGRTGTFIVIDMIL--DQIRKEGF-----DCE 535
VN + VHCSAG+GRTGTFIV+D IL + + GF D
Sbjct: 456 YVN----------NSHGSGNTIVHCSAGVGRTGTFIVLDTILRFPESKLSGFNPSVADSS 505
Query: 536 IDIHRTVQMVRDQRSGMVQNEAQYKFIY 563
+ + V +R QR MVQ Q+K++Y
Sbjct: 506 DVVFQLVDHIRKQRMKMVQTFTQFKYVY 533
Score = 38.7 bits (86), Expect = 0.002
Identities = 19/46 (41%), Positives = 31/46 (67%), Gaps = 3/46 (6%)
Query: 230 RKNRYKNIIPFDHTRVILKDIPPDGPPGSDYINANYIRCDSMDSIS 275
+KNRY +I+P++ TRV LK P DYINA++I+ ++ + I+
Sbjct: 297 KKNRYTDIVPYNCTRVHLK---RTSPSELDYINASFIKTETSNYIA 339
>SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 711
Score = 89.0 bits (211), Expect = 2e-18
Identities = 71/231 (30%), Positives = 100/231 (43%), Gaps = 26/231 (11%)
Query: 348 IPKSATETENGVPTVHVYNKTYIATQGCLSTTIYPFWSMIWQEDVR--IIIMTTKEIERG 405
+PK ++ N + V NK YIA Q T+ FW M+W +I+M T E G
Sbjct: 479 VPKGCSDYINA-SHIDVGNKKYIACQAPKPGTLLDFWEMVWHNSGTNGVIVMLTNLYEAG 537
Query: 406 KVKCERYWPDLNKTEVV---KKYTILNEFESSTPDYTLRRFLVTKKDETTVKRTIYHFHF 462
KC +YWPD NK + I + + D + L + I+HF
Sbjct: 538 SEKCSQYWPD-NKDHALCLEGGLRISVQKYETFEDLKVNTHLFRLDKPNGPPKYIHHFWV 596
Query: 463 TAWPDHRVPSEPGRVLNILLDVNYRLQQIMTGTDPPAQAVVCVHCSAGIGRTGTFIVIDM 522
W D P + + + + ++ P + VHCSAG+GRTGTFI +D
Sbjct: 597 HTWFDKTHPD-----IESITGIIRCIDKV------PNDGPMFVHCSAGVGRTGTFIAVDQ 645
Query: 523 ILDQIRKEGF-------DCEIDIHRTVQMVRDQRSGMVQNEAQYKFIYMAV 566
IL Q+ K D + I V +R QR MVQN Q+KF+Y V
Sbjct: 646 IL-QVPKNILPKTTNLEDSKDFIFNCVNSLRSQRMKMVQNFEQFKFLYDVV 695
Score = 37.5 bits (83), Expect = 0.005
Identities = 21/37 (56%), Positives = 26/37 (70%), Gaps = 4/37 (10%)
Query: 230 RKNRYKNIIPFDHTRVILKDIPPDGPPGSDYINANYI 266
RKNRY +I+P+D TRV L P G SDYINA++I
Sbjct: 460 RKNRYTDIVPYDKTRVRL--AVPKG--CSDYINASHI 492
>SPAC3C7.06c |pit1||serine/threonine protein kinase
Pit1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 650
Score = 33.1 bits (72), Expect = 0.11
Identities = 27/111 (24%), Positives = 44/111 (39%), Gaps = 2/111 (1%)
Query: 338 RPNPNY-FNTTIPKSATETENGVPTVHVYNKTYIATQGCLSTTIYPFWSMIWQEDVRIII 396
RP P+ F I KS N P T ++ CLS I P S++ ED R
Sbjct: 478 RPLPSTEFLVAINKSQEALLNNSPNSKS-GSTQLSASTCLSDLISPQLSILSHEDKRENQ 536
Query: 397 MTTKEIERGKVKCERYWPDLNKTEVVKKYTILNEFESSTPDYTLRRFLVTK 447
E + + + P L+ ++ + +N + S P + + L+ K
Sbjct: 537 SVNSESSKYSPRSSNHSPTLHSKDLHRDMATVNNYAKSPPSFHATQDLLRK 587
>SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 846
Score = 32.7 bits (71), Expect = 0.15
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 279 EFTGNGSTENGKDGTPSKAKDKSSPVHTSVIVTEEPVKSSKKVHGNG 325
+F T+NG+DG PSK+ + S V S + + V SK G+G
Sbjct: 76 KFLAMNGTQNGRDGLPSKSPRRPS-VSASTVRNSDDVNHSKAGPGSG 121
>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
Mam3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 32.3 bits (70), Expect = 0.20
Identities = 24/103 (23%), Positives = 47/103 (45%), Gaps = 4/103 (3%)
Query: 261 INANYIRCDSMDSISDSQEFTGNGSTENGKDGT-PSKAKDKSSPVHTSVIVTEEPVKSSK 319
++++ + ++ S S S T S+ + T P+ S +S+I++ + SS
Sbjct: 511 LSSSQLSTENFTSASSSLSLTNAKSSLSTPSTTIPTSNSSVSLQTSSSLIISSPIISSSL 570
Query: 320 KVHGNGTHKLPAFEPSVLRPNPNYFNTTIPKSATETENGVPTV 362
T PA S+ N +Y ++ IP S+T+ + + TV
Sbjct: 571 TATSTST---PALTHSITPSNTSYTSSLIPSSSTDYSSSLITV 610
>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1496
Score = 31.9 bits (69), Expect = 0.26
Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 334 PSVLRPN-PNYFNTTIPKSATETENGVPT 361
P+ L+PN P Y T IPKS+T EN T
Sbjct: 731 PTFLKPNSPEYAKTVIPKSSTNLENEYQT 759
>SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase
Clp1/Flp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 537
Score = 30.3 bits (65), Expect = 0.80
Identities = 11/17 (64%), Positives = 13/17 (76%)
Query: 502 VVCVHCSAGIGRTGTFI 518
V+ VHC AG+GRTG I
Sbjct: 281 VIAVHCKAGLGRTGCLI 297
>SPBC31F10.08 |mde2||Mde2 protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 209
Score = 29.9 bits (64), Expect = 1.1
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Query: 253 DGPPGSDYINANYIRCDSMDSISDSQEFTGNGSTENGKDGTPSKAKDKSSPVHTSVIVTE 312
DG S ++ NYI + S + + GN ++ + K +S H++V V
Sbjct: 106 DGLINSFPLSQNYISSSESQTSSGNVDIIGNDNSHASPYLPKFELKSQSQSNHSNV-VKN 164
Query: 313 EPVKSSKKVHGNGTH 327
+P+K KK G GT+
Sbjct: 165 QPIKLCKKTEG-GTN 178
>SPAC31G5.15 |||phosphatidylserine decarboxylase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 980
Score = 29.5 bits (63), Expect = 1.4
Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 4/82 (4%)
Query: 227 ENIRKNRYKNIIPFDHTRVILKDIPPDGPPGSDYINANYIRCDSMDSISDSQEFTGNGST 286
+ I+ N+ +I P + LK++ D SD ++++I DS E + + ST
Sbjct: 194 QQIKMNQ-TSIDPMSNISKSLKELEVDNVE-SDLEDSSFIA--EPDSSIPPSESSVSIST 249
Query: 287 ENGKDGTPSKAKDKSSPVHTSV 308
+ GK+ PSK+K S+ + S+
Sbjct: 250 DTGKETPPSKSKKSSNQPYVSI 271
>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 781
Score = 29.1 bits (62), Expect = 1.8
Identities = 28/93 (30%), Positives = 38/93 (40%), Gaps = 4/93 (4%)
Query: 282 GNGSTENGKDGTPSKAKDKSSPVHTSVIVTEEPVKSSKKVHGNGTHKLPAFEPSVLRPNP 341
GNGS DG + + SSP T +++ P SS G P+ +P V R
Sbjct: 264 GNGSYF---DGPLTASPTPSSPTGTPNSMSKSPSLSSLASTGASYRPGPS-KPLVSRVRD 319
Query: 342 NYFNTTIPKSATETENGVPTVHVYNKTYIATQG 374
NY NT+ TE + T V + QG
Sbjct: 320 NYANTSYESWPHSTEFDMFTYAVSGSLKLTPQG 352
>SPAC343.11c |msc1||multi-copy suppressor of Chk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1588
Score = 28.7 bits (61), Expect = 2.4
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 256 PGSDYINANYIRCDSMDSISDSQEFTGNGSTENGKDGTPSKAKDKSSPVHTSVIVTEEPV 315
P S + +NY +D+IS Q+F GN T K+ + +S TS T EP
Sbjct: 141 PSSMSLVSNY----PLDAISSQQKFHGNDKTLE-KNSAKATINKSNSTAETSSTATVEPY 195
Query: 316 KSS 318
S+
Sbjct: 196 DSN 198
>SPAC23A1.04c |mnl1||alpha mannosidase-like
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 787
Score = 27.9 bits (59), Expect = 4.2
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 420 EVVKKYTILNEFESSTPDYTLRRFLVTKKDETTVKRTIYHFHFT 463
E ++KYT+ N ES TL+ + D+ + R+ + F FT
Sbjct: 426 ENLEKYTLSNRMESFFLSETLKYLFLLFDDDNPIHRSHHDFIFT 469
>SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 886
Score = 27.9 bits (59), Expect = 4.2
Identities = 26/103 (25%), Positives = 43/103 (41%), Gaps = 10/103 (9%)
Query: 246 ILKDIPPDGPPGSDYINANYIRCDSMDSISDSQEFT----GNGSTENGKDGTPSKAKDKS 301
+L+ + G N+ +R + S +F +GST + D S
Sbjct: 196 VLQSLNAMGKKSFSRANSPLLRLTKSTTTSKETDFIPVPPAHGSTSMTSRSKLDDSTDNS 255
Query: 302 SPVHTSVIVTEEPVKSSKKVHGNGTHKLPAFEPSVLRPNPNYF 344
S TS+ E P+KSS+ + + P+ SVL P+ +YF
Sbjct: 256 SKPRTSLQPGESPMKSSRDI-----SRKPSMASSVLSPS-DYF 292
>SPBC609.02 |ptn1||phosphatidylinositol-3,4,
5-trisphosphate3-phosphatase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 348
Score = 27.5 bits (58), Expect = 5.6
Identities = 11/14 (78%), Positives = 11/14 (78%)
Query: 505 VHCSAGIGRTGTFI 518
VHC AG GRTGT I
Sbjct: 127 VHCKAGKGRTGTVI 140
>SPAC1071.04c |||signal peptidase subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 167
Score = 27.5 bits (58), Expect = 5.6
Identities = 13/53 (24%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 376 LSTTIYPFWSMIWQEDVRIIIMTTKEIERGKVKCERYWPDLNKTEVVKKYTIL 428
L++ + FWS + + + + TK+ K+ + + P NK + K+T+L
Sbjct: 75 LASCLLTFWSSVVKGST--VYVATKKERHIKISADTFLPLKNKPLITTKFTVL 125
>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1339
Score = 27.5 bits (58), Expect = 5.6
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 6/62 (9%)
Query: 182 VKQLQKENEGPIESMAYKQGFWEEFET-LQMMENLQLFDRMEGSKPENIRKNRYKNIIPF 240
VK+ +KE + P M Q E + EN Q +E KP+ +RK+RY ++ F
Sbjct: 816 VKKNEKEKDDP---MRLAQQLLESLAPDFALHENTQQKSPVE--KPKKLRKDRYASVEEF 870
Query: 241 DH 242
D+
Sbjct: 871 DY 872
>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1729
Score = 26.6 bits (56), Expect = 9.8
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 431 FESSTPDYTLRRFLVTKKDETTVKRTIYHF 460
F+S+TP+YTLR + T+ RTI F
Sbjct: 809 FKSATPEYTLRTRIWASLRTQTLYRTINGF 838
>SPCC11E10.04 |||mitochondrial ATPase expression protein
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 443
Score = 26.6 bits (56), Expect = 9.8
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
Query: 220 RMEGSKPENIRKNRYKNIIP--FDHTRV---ILKDIPPDGP--PGSDYINANYIRCDSMD 272
R+ GS P NIRK +K I+ + HT + +L DI P + I +N +R S
Sbjct: 2 RILGSLPNNIRKCTFKLILQKRYSHTDILKELLYDISDSQKFIPSASPIASNLLRVSSYG 61
Query: 273 SIS 275
+S
Sbjct: 62 KLS 64
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 26.6 bits (56), Expect = 9.8
Identities = 25/89 (28%), Positives = 38/89 (42%), Gaps = 13/89 (14%)
Query: 273 SISDSQEFTGNGSTENGKDGTPSKAKDKSSPVHTSVIVTEEPVKSSKKVHGNGTHKLPAF 332
+I + +GN ++G SK++ +S V ++ TEEPV + + T K P
Sbjct: 175 AIPSKPKVSGNMQNKSGVSSYSSKSQSVNSSVTSNPPHTEEPVAAKPEASSTAT-KGP-- 231
Query: 333 EPSVLRPNPNYFNTTIPKSATETENGVPT 361
RP + NT T NG PT
Sbjct: 232 -----RPTTSASNTN-----TSPANGAPT 250
>SPAC32A11.04c |tif212|tif22, SPAC6B12.17c|translation initiation
factor eIF2 beta subunit|Schizosaccharomyces pombe|chr
1|||Manual
Length = 321
Score = 26.6 bits (56), Expect = 9.8
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 269 DSMDSIS-DSQEFTGNGSTENGKDGTPSKAKDKSSPVHTSVIVTEEPVKSSKK 320
D +D++S D E + G+T+ S AKD ++PV + + + SS K
Sbjct: 32 DEVDAVSKDGPEASSAGATDEDDSERKSSAKDLTTPVTEGEVDELKDMFSSMK 84
>SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor
Mcl1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 26.6 bits (56), Expect = 9.8
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 394 IIIMTTKEIERGKVKCERYWP 414
I ++ T E+ER K + E YWP
Sbjct: 648 IPVLDTNELERRKSRQESYWP 668
>SPCC553.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 349
Score = 26.6 bits (56), Expect = 9.8
Identities = 25/120 (20%), Positives = 39/120 (32%), Gaps = 5/120 (4%)
Query: 270 SMDSISDSQEFTGNGSTENGKDGTPSKAKDKSSPVHTSVIVTEEPVKSSKKVHGNGT--- 326
S S S S + +T + TPS SS +S + + SS K +
Sbjct: 117 SSSSSSSSSSSLVSSTTSSSSSATPSTTSSSSSSSSSSSSSSSKSSSSSSKSSSRSSSRT 176
Query: 327 --HKLPAFEPSVLRPNPNYFNTTIPKSATETENGVPTVHVYNKTYIATQGCLSTTIYPFW 384
H+ + + S RP + T + T NG + + T FW
Sbjct: 177 TSHRTTSHKSSSYRPTVFPYTTISHYNITNATNGTYCNGTNGTNFTCIVNASNATNSTFW 236
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.135 0.406
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,942,032
Number of Sequences: 5004
Number of extensions: 134190
Number of successful extensions: 388
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 363
Number of HSP's gapped (non-prelim): 30
length of query: 598
length of database: 2,362,478
effective HSP length: 77
effective length of query: 521
effective length of database: 1,977,170
effective search space: 1030105570
effective search space used: 1030105570
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 56 (26.6 bits)
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