GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001100-TA|BGIBMGA001100-PA|IPR000980|SH2 motif,
IPR000242|Tyrosine specific protein phosphatase, IPR000387|Tyrosine
specific protein phosphatase and dual specificity protein phosphatase,
IPR003595|Protein tyrosine phosphatase, catalytic region
         (598 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              26   0.77 
M12598-1|AAA27733.1|   77|Apis mellifera protein ( Bee preprosec...    23   5.4  
AY082691-1|AAL92482.1|   77|Apis mellifera preprosecapin protein.      23   5.4  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    23   5.4  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 26.2 bits (55), Expect = 0.77
 Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 4/48 (8%)

Query: 358 GVPTVHVYNKTYIATQGCLSTTI----YPFWSMIWQEDVRIIIMTTKE 401
           G+P +   +K  I     L  T     YP  S++W+ D R++ +  K+
Sbjct: 490 GLPFIRHMDKKAIVAGETLRVTCPVAGYPIESIVWERDTRVLPINRKQ 537



 Score = 23.0 bits (47), Expect = 7.1
 Identities = 17/77 (22%), Positives = 29/77 (37%), Gaps = 2/77 (2%)

Query: 251  PPDGPPGSDYINANYIRCDSMDSISDSQEFTGNGSTENGKDGTPSKAKDKSSPVHTSVIV 310
            PP  P   D  N+++   DS +S   S+         N   G  ++ KD  +      ++
Sbjct: 1860 PPPPPRNHDQNNSSFN--DSKESNEISEAECDRDQLVNRNYGVNARGKDGMTTEEMRKLI 1917

Query: 311  TEEPVKSSKKVHGNGTH 327
                  S +   G+G H
Sbjct: 1918 ERNEAPSRQTGSGHGGH 1934


>M12598-1|AAA27733.1|   77|Apis mellifera protein ( Bee
           preprosecapin mRNA, complete cds. ).
          Length = 77

 Score = 23.4 bits (48), Expect = 5.4
 Identities = 8/13 (61%), Positives = 10/13 (76%)

Query: 249 DIPPDGPPGSDYI 261
           D+PP  PPGS +I
Sbjct: 56  DVPPRCPPGSKFI 68


>AY082691-1|AAL92482.1|   77|Apis mellifera preprosecapin protein.
          Length = 77

 Score = 23.4 bits (48), Expect = 5.4
 Identities = 8/13 (61%), Positives = 10/13 (76%)

Query: 249 DIPPDGPPGSDYI 261
           D+PP  PPGS +I
Sbjct: 56  DVPPRCPPGSKFI 68


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 23.4 bits (48), Expect = 5.4
 Identities = 9/40 (22%), Positives = 20/40 (50%)

Query: 25  HDGYFLARPSSSNKGDFTLSVRRGNEVTHIKIQNNGEFLD 64
           +D YF ++ + SN  +  +  ++  E      + N ++LD
Sbjct: 139 NDNYFYSKSNGSNSSNSDVLFKQNKEEEQTINRKNSDYLD 178


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.135    0.406 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,854
Number of Sequences: 429
Number of extensions: 9022
Number of successful extensions: 15
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 10
Number of HSP's gapped (non-prelim): 5
length of query: 598
length of database: 140,377
effective HSP length: 62
effective length of query: 536
effective length of database: 113,779
effective search space: 60985544
effective search space used: 60985544
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 46 (22.6 bits)