GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001100-TA|BGIBMGA001100-PA|IPR000980|SH2 motif,
IPR000242|Tyrosine specific protein phosphatase, IPR000387|Tyrosine
specific protein phosphatase and dual specificity protein phosphatase,
IPR003595|Protein tyrosine phosphatase, catalytic region
         (598 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g71860.1 68414.m08305 protein tyrosine phosphatase 1 (PTP1) i...   114   1e-25
At1g71860.2 68414.m08304 protein tyrosine phosphatase 1 (PTP1) i...    67   3e-11
At3g19080.1 68416.m02423 SWIB complex BAF60b domain-containing p...    31   1.6  
At3g19420.1 68416.m02463 expressed protein                             31   2.9  
At4g18770.1 68417.m02773 myb family transcription factor (MYB98)...    29   6.6  
At4g18240.1 68417.m02709 starch synthase-related protein contain...    29   6.6  
At2g05590.2 68415.m00595 expressed protein similar to nucleolar ...    29   6.6  
At2g05590.1 68415.m00594 expressed protein similar to nucleolar ...    29   6.6  
At1g64385.1 68414.m07297 expressed protein                             29   6.6  
At4g24560.1 68417.m03520 ubiquitin-specific protease 16, putativ...    29   8.8  
At3g50110.1 68416.m05478 phosphatase-related similar to PTEN1 GI...    29   8.8  

>At1g71860.1 68414.m08305 protein tyrosine phosphatase 1 (PTP1)
           identical to protein tyrosine phosphatase 1 GI:3170531
           from [Arabidopsis thaliana]; contains Pfam profile:
           PF00102 protein-tyrosine phosphatase
          Length = 340

 Score =  114 bits (275), Expect = 1e-25
 Identities = 71/205 (34%), Positives = 106/205 (51%), Gaps = 12/205 (5%)

Query: 369 YIATQGCLSTTIYPFWSMIWQEDVRIIIMTTKEIERGK-VKCERYWPDLNKTEVVKKYTI 427
           +IATQG L  T+  FW M+ Q+   II+M T+ ++  + VKC  Y+ D +        ++
Sbjct: 134 FIATQGPLPHTMEDFWEMVIQQHCPIIVMLTRLVDNNRTVKCGDYFQDEDGPREFGNISL 193

Query: 428 LNEFESSTP-DYTLRRFLVTKKDETTVKRTIYHFHFTAWPDHRVPSEPGRVLNILLDVNY 486
             ++  +T     LR   V  K+      ++ H  +  WPDH VP +   V  IL     
Sbjct: 194 TTKWIKTTDTSLMLRNLEVNYKETEDQPMSVLHIQYPEWPDHGVPKDTVAVREILK---- 249

Query: 487 RLQQIMTGTDPPAQAVVCVHCSAGIGRTGTFIVIDMILDQIRKEGFDCEIDIHRTVQMVR 546
           RL Q+     PP+   + VHCSAGIGRTGT+  I   + +I   G    +D+ +TV + R
Sbjct: 250 RLYQV-----PPSLGPIIVHCSAGIGRTGTYCAIHNTIQRI-LAGDMSALDLAKTVALFR 303

Query: 547 DQRSGMVQNEAQYKFIYMAVLEFIE 571
            QR GMVQ   QY F Y A+++ +E
Sbjct: 304 KQRIGMVQTMDQYFFCYNAIVDELE 328



 Score = 44.4 bits (100), Expect = 2e-04
 Identities = 26/102 (25%), Positives = 50/102 (49%), Gaps = 6/102 (5%)

Query: 174 QVRHFHTRVKQLQKENEGPIESMAYKQGFWEEFETLQMMENLQLFDRMEGSKPENIRKNR 233
           Q+ H H  +   + + + P +S+A++   +   +  +M  +  L +        N+ KNR
Sbjct: 37  QLNHCHQALGVFRGKIQNP-DSIAHE---FTGLQANRMWPSELLLNSTVAMNSVNVEKNR 92

Query: 234 YKNIIPFDHTRVILKDIPPDGPPGSDYINANYIRCDSMDSIS 275
           Y +++PFD  R++L         G  Y+NA+ I+    +SIS
Sbjct: 93  YSDVVPFDKNRIVLNPCKDSSAKG--YVNASLIKTSESESIS 132


>At1g71860.2 68414.m08304 protein tyrosine phosphatase 1 (PTP1)
           identical to protein tyrosine phosphatase 1 GI:3170531
           from [Arabidopsis thaliana]; contains Pfam profile:
           PF00102 protein-tyrosine phosphatase
          Length = 277

 Score = 67.3 bits (157), Expect = 3e-11
 Identities = 43/141 (30%), Positives = 67/141 (47%), Gaps = 11/141 (7%)

Query: 369 YIATQGCLSTTIYPFWSMIWQEDVRIIIMTTKEIERGK-VKCERYWPDLNKTEVVKKYTI 427
           +IATQG L  T+  FW M+ Q+   II+M T+ ++  + VKC  Y+ D +        ++
Sbjct: 134 FIATQGPLPHTMEDFWEMVIQQHCPIIVMLTRLVDNNRTVKCGDYFQDEDGPREFGNISL 193

Query: 428 LNEFESST-PDYTLRRFLVTKKDETTVKRTIYHFHFTAWPDHRVPSEPGRVLNILLDVNY 486
             ++  +T     LR   V  K+      ++ H  +  WPDH VP +   V  IL     
Sbjct: 194 TTKWIKTTDTSLMLRNLEVNYKETEDQPMSVLHIQYPEWPDHGVPKDTVAVREIL----K 249

Query: 487 RLQQIMTGTDPPAQAVVCVHC 507
           RL Q+     PP+   + VHC
Sbjct: 250 RLYQV-----PPSLGPIIVHC 265



 Score = 44.4 bits (100), Expect = 2e-04
 Identities = 26/102 (25%), Positives = 50/102 (49%), Gaps = 6/102 (5%)

Query: 174 QVRHFHTRVKQLQKENEGPIESMAYKQGFWEEFETLQMMENLQLFDRMEGSKPENIRKNR 233
           Q+ H H  +   + + + P +S+A++   +   +  +M  +  L +        N+ KNR
Sbjct: 37  QLNHCHQALGVFRGKIQNP-DSIAHE---FTGLQANRMWPSELLLNSTVAMNSVNVEKNR 92

Query: 234 YKNIIPFDHTRVILKDIPPDGPPGSDYINANYIRCDSMDSIS 275
           Y +++PFD  R++L         G  Y+NA+ I+    +SIS
Sbjct: 93  YSDVVPFDKNRIVLNPCKDSSAKG--YVNASLIKTSESESIS 132


>At3g19080.1 68416.m02423 SWIB complex BAF60b domain-containing
           protein contains Pfam profile PF02201: BAF60b domain of
           the SWIB complex
          Length = 462

 Score = 31.5 bits (68), Expect = 1.6
 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 3/54 (5%)

Query: 252 PDGPPGSDYINANYIRCDSMDSISDSQEFTGNGS-TENGKDGTPSKAKDKSSPV 304
           P+ P   +YINA+ I+ +      D ++  G+GS +E  K+  P KAK +   +
Sbjct: 65  PESPKVEEYINADEIKAEIEG--GDGEDLDGDGSGSEEEKEERPVKAKKRGGGI 116


>At3g19420.1 68416.m02463 expressed protein
          Length = 611

 Score = 30.7 bits (66), Expect = 2.9
 Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 2/74 (2%)

Query: 502 VVCVHCSAGIGRTGTFIVIDMILDQIRKEGFDCEIDIHRTVQMVRDQRSGMVQNEAQYKF 561
           VV VHC AG+ RTG  I   ++  +      +C +D +   + V D +  ++ ++ +Y  
Sbjct: 258 VVVVHCKAGMARTGLMICSLLLYLKFFPTAEEC-MDFYNQKRCV-DGKGLVLPSQIRYVK 315

Query: 562 IYMAVLEFIETEKQ 575
            +  +L +   E Q
Sbjct: 316 YFERILTYFNGENQ 329


>At4g18770.1 68417.m02773 myb family transcription factor (MYB98)
           identical to transcription factor (MYB98) GI:15375282
           from [Arabidopsis thaliana]
          Length = 427

 Score = 29.5 bits (63), Expect = 6.6
 Identities = 22/96 (22%), Positives = 43/96 (44%), Gaps = 9/96 (9%)

Query: 189 NEGPIESMAYKQGFWEEFETLQMMENLQLFDRMEGSK-PENIRKNRYKNII-----PFD- 241
           N  P E  +Y++   + +ET   + N   F  +E S    N   ++  N++     P D 
Sbjct: 81  NNAPFEHCSYQENMVDFYETKPNLMNHHHFQAVENSYFTRNHHHHQEINLVDEHDDPMDL 140

Query: 242 --HTRVILKDIPPDGPPGSDYINANYIRCDSMDSIS 275
             +  ++++ IP D PP   +   N++  D +  +S
Sbjct: 141 EQNNMMMMRMIPFDYPPTETFKPMNFVMPDEISCVS 176


>At4g18240.1 68417.m02709 starch synthase-related protein contains
           similarity to starch synthase GI:4582783 from [Vigna
           unguiculata]
          Length = 1040

 Score = 29.5 bits (63), Expect = 6.6
 Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 1/56 (1%)

Query: 172 RIQVRHFHTRVKQLQKENEGPIESMAYKQGFWEEFETLQMMENLQLFDRMEGSKPE 227
           +  V     ++++L+ E   PIES  Y     +E ETL+ +ENL L + +E  K E
Sbjct: 248 KAHVELLEEQLEKLRHEMISPIESDGYVLALSKELETLK-LENLSLRNDIEMLKSE 302


>At2g05590.2 68415.m00595 expressed protein similar to nucleolar
           protein C7C (GI:13540302) [Rattus norvegicus]
          Length = 303

 Score = 29.5 bits (63), Expect = 6.6
 Identities = 19/81 (23%), Positives = 37/81 (45%), Gaps = 2/81 (2%)

Query: 298 KDKSSPVHTSVIVTEEPVKSSKKVHGNGTHKLPAFEPSVLRPNPNYFNTTIPKSATETEN 357
           KDK S    S +  + P +S+   + N          SV +   +YF+  +P+S  E ++
Sbjct: 5   KDKVSQ-KLSNLFADSPSQSASPRYSNSDSPKARLNSSVGKSLSSYFSFVVPQSGNEEDS 63

Query: 358 GV-PTVHVYNKTYIATQGCLS 377
            + P + +  ++Y   + C S
Sbjct: 64  ELCPPLPIRTESYECIENCKS 84


>At2g05590.1 68415.m00594 expressed protein similar to nucleolar
           protein C7C (GI:13540302) [Rattus norvegicus]
          Length = 263

 Score = 29.5 bits (63), Expect = 6.6
 Identities = 19/81 (23%), Positives = 37/81 (45%), Gaps = 2/81 (2%)

Query: 298 KDKSSPVHTSVIVTEEPVKSSKKVHGNGTHKLPAFEPSVLRPNPNYFNTTIPKSATETEN 357
           KDK S    S +  + P +S+   + N          SV +   +YF+  +P+S  E ++
Sbjct: 5   KDKVSQ-KLSNLFADSPSQSASPRYSNSDSPKARLNSSVGKSLSSYFSFVVPQSGNEEDS 63

Query: 358 GV-PTVHVYNKTYIATQGCLS 377
            + P + +  ++Y   + C S
Sbjct: 64  ELCPPLPIRTESYECIENCKS 84


>At1g64385.1 68414.m07297 expressed protein
          Length = 351

 Score = 29.5 bits (63), Expect = 6.6
 Identities = 19/73 (26%), Positives = 30/73 (41%)

Query: 207 ETLQMMENLQLFDRMEGSKPENIRKNRYKNIIPFDHTRVILKDIPPDGPPGSDYINANYI 266
           E   ++ N  L D   G   EN+  +  K+II  DH++    D       GS  I ++  
Sbjct: 24  EAQVVVSNSNLTDTRFGGGSENVTDSSSKSIITIDHSKNSTNDDDTQLGDGSKMIGSDSS 83

Query: 267 RCDSMDSISDSQE 279
           + D     SD  +
Sbjct: 84  KSDQGKIASDESD 96


>At4g24560.1 68417.m03520 ubiquitin-specific protease 16, putative
           (UBP16) similar to ubiquitin-specific protease 16
           GI:11993477 [Arabidopsis thaliana]
          Length = 1008

 Score = 29.1 bits (62), Expect = 8.8
 Identities = 20/73 (27%), Positives = 31/73 (42%)

Query: 375 CLSTTIYPFWSMIWQEDVRIIIMTTKEIERGKVKCERYWPDLNKTEVVKKYTILNEFESS 434
           C+  + Y        ED  +I +T     R K+KC +        E +   T+  + + S
Sbjct: 643 CIKASEYDMTKSSKLEDTTLIGLTFGGYLRSKIKCMKCQVKSELREKMMDLTVEIDGDIS 702

Query: 435 TPDYTLRRFLVTK 447
           T D  LRRF  T+
Sbjct: 703 TLDDALRRFTRTE 715


>At3g50110.1 68416.m05478 phosphatase-related similar to PTEN1
           GI:5566292 from [Drosophila melanogaster]; contains
           prosite evidence: PS00383: Tyrosine specific protein
           phosphatases active site
          Length = 632

 Score = 29.1 bits (62), Expect = 8.8
 Identities = 14/30 (46%), Positives = 15/30 (50%)

Query: 489 QQIMTGTDPPAQAVVCVHCSAGIGRTGTFI 518
           Q   T      Q VV VHC AG+ RTG  I
Sbjct: 289 QSAYTWLKEDIQNVVVVHCKAGMARTGLMI 318


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.135    0.406 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,262,312
Number of Sequences: 28952
Number of extensions: 696926
Number of successful extensions: 1766
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1754
Number of HSP's gapped (non-prelim): 13
length of query: 598
length of database: 12,070,560
effective HSP length: 85
effective length of query: 513
effective length of database: 9,609,640
effective search space: 4929745320
effective search space used: 4929745320
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 62 (29.1 bits)