Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001099-TA|BGIBMGA001099-PA|undefined
         (144 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           26   0.12 
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    26   0.15 
Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor ...    25   0.35 
X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Triboliu...    23   0.81 
U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II p...    23   0.81 
U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I pr...    23   0.81 
AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    21   3.3  
AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    21   3.3  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      20   7.6  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      20   7.6  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          20   10.0 

>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 26.2 bits (55), Expect = 0.12
 Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 1/64 (1%)

Query: 56  RNQLRSTKSNEGDRPSGSKDNFEEKEITPDQKWQSLGKVF-RRQSFAETWNKSPKSPGEN 114
           R + R+T     + P   + N +  E+T      + G  F +R S  + W  +  S   N
Sbjct: 315 RERPRATDHQRRNEPKRPRPNIDRHEVTRPAAPANRGNGFPKRSSDEQQWRNNQPSTSNN 374

Query: 115 SSHS 118
             H+
Sbjct: 375 RWHN 378



 Score = 20.2 bits (40), Expect = 7.6
 Identities = 10/30 (33%), Positives = 13/30 (43%)

Query: 47  WKKSISNFFRNQLRSTKSNEGDRPSGSKDN 76
           W+K+  N  RN   S    E  R S +  N
Sbjct: 388 WRKNNPNDNRNNTSSRAQGETSRNSKNSGN 417


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 25.8 bits (54), Expect = 0.15
 Identities = 22/88 (25%), Positives = 36/88 (40%), Gaps = 6/88 (6%)

Query: 53  NFFRNQLRSTKSNEGDRPSGSKDNFEEKEITPDQKWQSLGKVFRRQSFAETWNKSPKSPG 112
           NF +N L S      + P+  K    EK  +P Q+  S+  +  +          P+S  
Sbjct: 668 NFLKNALMSNNILPPESPTRDKSKQNEKSPSPQQRSPSVTDLSTKDG-----TTVPES-N 721

Query: 113 ENSSHSKRLAVKKVISSYFGKSQKVTSA 140
             SS S   A++K+I   F    +  S+
Sbjct: 722 NGSSPSVLNAIEKLIEKSFDSRSRQNSS 749



 Score = 20.2 bits (40), Expect = 7.6
 Identities = 11/36 (30%), Positives = 12/36 (33%)

Query: 5  EGSQPENDTLSKSNDICQKKPNKVPAEGTDSLELTS 40
          EGS  E D L    D     PN   +      E  S
Sbjct: 19 EGSPEEGDKLEGDEDTGSMTPNSAASPAPPEEEAAS 54


>Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor
          5-like protein protein.
          Length = 162

 Score = 24.6 bits (51), Expect = 0.35
 Identities = 20/77 (25%), Positives = 30/77 (38%), Gaps = 7/77 (9%)

Query: 1  MLCPEGSQPENDTL--SKSNDI---CQKKPNKVPAEGTDSLELTSYKNPKTWKKSISNFF 55
          +LCPE   PE + L  +K + I   C+      P E    L     KNP     ++    
Sbjct: 11 VLCPECENPETELLVSTKRSTISQGCKACGYHSPLESNHKLVTFILKNPPNLNPAVQG-- 68

Query: 56 RNQLRSTKSNEGDRPSG 72
           +     +S    RP+G
Sbjct: 69 SSLTEGKRSKRSKRPNG 85


>X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Tribolium
           castaneum mRNAfor alhpa amylase 3'region. ).
          Length = 489

 Score = 23.4 bits (48), Expect = 0.81
 Identities = 9/31 (29%), Positives = 18/31 (58%)

Query: 33  TDSLELTSYKNPKTWKKSISNFFRNQLRSTK 63
           T   ++ +YKNPK +K +I+    +   +T+
Sbjct: 309 TGGSQILTYKNPKPYKMAIAFMLAHPYGTTR 339


>U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II
           protein.
          Length = 490

 Score = 23.4 bits (48), Expect = 0.81
 Identities = 9/31 (29%), Positives = 18/31 (58%)

Query: 33  TDSLELTSYKNPKTWKKSISNFFRNQLRSTK 63
           T   ++ +YKNPK +K +I+    +   +T+
Sbjct: 310 TGGSQILTYKNPKPYKMAIAFMLAHPYGTTR 340


>U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I
           protein.
          Length = 490

 Score = 23.4 bits (48), Expect = 0.81
 Identities = 9/31 (29%), Positives = 18/31 (58%)

Query: 33  TDSLELTSYKNPKTWKKSISNFFRNQLRSTK 63
           T   ++ +YKNPK +K +I+    +   +T+
Sbjct: 310 TGGSQILTYKNPKPYKMAIAFMLAHPYGTTR 340


>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 21.4 bits (43), Expect = 3.3
 Identities = 13/46 (28%), Positives = 20/46 (43%)

Query: 41  YKNPKTWKKSISNFFRNQLRSTKSNEGDRPSGSKDNFEEKEITPDQ 86
           Y N      S  N + + +  TK++E  +     DN E K   P+Q
Sbjct: 91  YSNLLPRPGSNDNSWESLIEVTKTSETSKLQQLVDNIEHKLSDPNQ 136


>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 21.4 bits (43), Expect = 3.3
 Identities = 16/58 (27%), Positives = 23/58 (39%), Gaps = 2/58 (3%)

Query: 56  RNQLRSTKSNEGDRPSGSKDNFEEKEITPDQKWQSLGKVFRRQSFAETWNKSPKSPGE 113
           R   R TKS+E D  + S D   + E+     +  +     R  F+     SP S  E
Sbjct: 124 RTASRETKSSESDSGASSAD--PDDELRSSSAFSYIKPSSERDYFSVKKLPSPASDSE 179


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 20.2 bits (40), Expect = 7.6
 Identities = 12/60 (20%), Positives = 25/60 (41%)

Query: 26  NKVPAEGTDSLELTSYKNPKTWKKSISNFFRNQLRSTKSNEGDRPSGSKDNFEEKEITPD 85
           N++     D    ++YK P  +   I N  R++   +K ++       K+N  + +   D
Sbjct: 409 NRILNNLLDKKPYSTYKFPTNFDALIVNEMRSEKPESKKDKKGSQVDHKNNLGDSKNNQD 468


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 20.2 bits (40), Expect = 7.6
 Identities = 12/60 (20%), Positives = 25/60 (41%)

Query: 26  NKVPAEGTDSLELTSYKNPKTWKKSISNFFRNQLRSTKSNEGDRPSGSKDNFEEKEITPD 85
           N++     D    ++YK P  +   I N  R++   +K ++       K+N  + +   D
Sbjct: 301 NRILNNLLDKKPYSTYKFPTNFDALIVNEMRSEKPESKKDKKGSQVDHKNNLGDSKNNQD 360


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 19.8 bits (39), Expect = 10.0
 Identities = 8/16 (50%), Positives = 10/16 (62%)

Query: 74  KDNFEEKEITPDQKWQ 89
           K+  EE E  PD KW+
Sbjct: 215 KEVKEEIEDEPDHKWK 230


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.304    0.122    0.351 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 37,232
Number of Sequences: 317
Number of extensions: 1542
Number of successful extensions: 14
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of query: 144
length of database: 114,650
effective HSP length: 51
effective length of query: 93
effective length of database: 98,483
effective search space:  9158919
effective search space used:  9158919
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.2 bits)
S2: 39 (19.8 bits)