Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001099-TA|BGIBMGA001099-PA|undefined
(144 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1046 + 30405805-30405858,30405991-30407950,30408460-30408476 31 0.28
10_08_0943 + 21728294-21728675,21728767-21728840,21729469-217304... 31 0.37
05_07_0079 - 27539389-27539892,27540059-27540343,27540453-275405... 30 0.84
05_01_0164 + 1134815-1134911,1135078-1135278,1135875-1136156,113... 29 1.9
03_05_0203 - 21951622-21951766,21951936-21952005,21952325-21952409 29 1.9
02_05_0702 - 31027908-31027958,31028062-31029311,31029665-310298... 29 1.9
03_05_0822 - 27963849-27964544,27965043-27965091,27965372-279654... 27 4.5
03_05_0788 + 27709563-27709832,27710101-27710887,27710947-277110... 27 4.5
01_06_1513 - 37884198-37884485,37884966-37886951,37886976-378873... 27 4.5
12_02_1281 + 27523411-27523561,27523725-27523810,27524653-275247... 27 5.9
06_03_0551 - 22027441-22028224,22029015-22029344,22029510-220297... 27 5.9
01_06_1658 - 38954953-38955145,38955310-38955368,38955541-389555... 27 5.9
09_06_0048 + 20477076-20478547,20478643-20478722,20478880-204788... 27 7.9
>04_04_1046 + 30405805-30405858,30405991-30407950,30408460-30408476
Length = 676
Score = 31.5 bits (68), Expect = 0.28
Identities = 19/57 (33%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
Query: 41 YKNPKTWKKSISNFFRNQLRSTKSNEGDRPSGSKDNFEEKEITPDQKWQSLGKVFRR 97
Y P WK R R K+NEG P S+D P W++LG V R
Sbjct: 593 YHRPSPWKVLGGVLHRTTRRGEKNNEGAPPLFSRDVHGNGHHRP-SPWKALGGVLHR 648
>10_08_0943 +
21728294-21728675,21728767-21728840,21729469-21730443,
21730617-21730683,21730765-21730827,21731001-21731064,
21731162-21731255,21731352-21731435,21731523-21731612,
21731708-21731735,21732117-21732596,21732679-21732740,
21732820-21732929,21733014-21733101,21733228-21733557,
21733782-21733904
Length = 1037
Score = 31.1 bits (67), Expect = 0.37
Identities = 22/88 (25%), Positives = 32/88 (36%), Gaps = 4/88 (4%)
Query: 4 PEGSQPENDTLSKSN----DICQKKPNKVPAEGTDSLELTSYKNPKTWKKSISNFFRNQL 59
P GS P+ND S+ D+ K P SL+ P +K + NF + +
Sbjct: 688 PVGSAPKNDNKSRHGIQAADVSGVTSAKDPTSTKTSLDRLKQPMPYKGRKELMNFLHDAM 747
Query: 60 RSTKSNEGDRPSGSKDNFEEKEITPDQK 87
+S N P + DQK
Sbjct: 748 QSPDKNTSTAPVSQRKRVAAPLGNVDQK 775
>05_07_0079 -
27539389-27539892,27540059-27540343,27540453-27540550,
27540951-27541042,27541155-27541259,27541360-27541567,
27542469-27542472,27542742-27542765,27545025-27546266
Length = 853
Score = 29.9 bits (64), Expect = 0.84
Identities = 20/79 (25%), Positives = 37/79 (46%)
Query: 66 EGDRPSGSKDNFEEKEITPDQKWQSLGKVFRRQSFAETWNKSPKSPGENSSHSKRLAVKK 125
E D S+ + KE TP + + K + +S + + E +S+ K+ K+
Sbjct: 328 EQDIQDVSEKRKKVKEGTPAAETPKISKKGKEKSKRALDKEGEDASVEEASNKKKKGKKE 387
Query: 126 VISSYFGKSQKVTSADGEK 144
V+S K+ KV ++G+K
Sbjct: 388 VVSDVGEKNSKVKKSNGDK 406
>05_01_0164 +
1134815-1134911,1135078-1135278,1135875-1136156,
1136237-1136271,1136356-1136445,1137228-1137357,
1137400-1138004,1138128-1138562
Length = 624
Score = 28.7 bits (61), Expect = 1.9
Identities = 19/74 (25%), Positives = 30/74 (40%)
Query: 49 KSISNFFRNQLRSTKSNEGDRPSGSKDNFEEKEITPDQKWQSLGKVFRRQSFAETWNKSP 108
+S S N+ +++ + P+G K N I+P SL V S A T K
Sbjct: 367 RSTSRTDVNKANPARASRNNIPTGGKSNRVSPSISPSSSVDSLSSVVSGASTASTVGKMS 426
Query: 109 KSPGENSSHSKRLA 122
+ S+ S L+
Sbjct: 427 HTSESFSTRSSSLS 440
>03_05_0203 -
21951622-21951766,21951936-21952005,21952325-21952409
Length = 99
Score = 28.7 bits (61), Expect = 1.9
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 69 RPSGSKDNFEEKEITPDQKWQSLGK 93
+P+G+K F +E P+Q WQ+ G+
Sbjct: 35 KPAGNKKKFITREEEPEQYWQAAGE 59
>02_05_0702 - 31027908-31027958,31028062-31029311,31029665-31029842,
31029955-31030017,31031597-31031704,31031772-31031836,
31031928-31032015,31032104-31032157,31032234-31032380,
31033358-31033429,31034077-31034226,31034317-31034430,
31034762-31034875,31035925-31036077,31037437-31037529,
31038202-31038318,31038984-31039086,31039192-31039376,
31039448-31039522,31040451-31040534,31041547-31041588,
31041668-31041847,31042109-31042162,31042239-31042280,
31042869-31042967,31043040-31043174,31043325-31043427,
31045061-31045134,31045227-31045270,31045393-31045471,
31045592-31045705,31045842-31045946,31046027-31046161,
31046447-31046546,31046870-31046883,31046936-31047004,
31047079-31047182,31047299-31047347,31047931-31048023,
31048102-31048210,31048619-31048755,31048851-31048928,
31049015-31049104,31049402-31049467,31049546-31049638,
31049711-31049839,31050024-31050122,31051366-31051512,
31051605-31051910
Length = 2050
Score = 28.7 bits (61), Expect = 1.9
Identities = 32/122 (26%), Positives = 53/122 (43%), Gaps = 13/122 (10%)
Query: 27 KVPAEGTDSLELTSYKNPKTWKKSISNFFRNQLRSTKSNEGDRPSGSKD---NFEEKEIT 83
K+ A + ELT K ++ K + + +Q ++T N ++ KD EK +
Sbjct: 1452 KLDASAKEKEELT--KEKQSLSKQLEDLKSSQ-KTTTENSNEQAIKEKDFRIQTLEKVLE 1508
Query: 84 PDQKWQSLGKVFRRQS------FAETWNKSPKSPGENSSHSKRLAVKKVISSYFGKSQKV 137
++ K FRR++ + N+ K E S R AVK+VI Y G S ++
Sbjct: 1509 KERDDNKKEKAFRRRNEKVFTTAIQNMNQERKQV-EESIEKHRQAVKEVIEHYTGISSQI 1567
Query: 138 TS 139
S
Sbjct: 1568 PS 1569
>03_05_0822 -
27963849-27964544,27965043-27965091,27965372-27965480,
27965979-27966006,27966086-27966276,27966418-27966532,
27966955-27967206
Length = 479
Score = 27.5 bits (58), Expect = 4.5
Identities = 26/117 (22%), Positives = 47/117 (40%), Gaps = 3/117 (2%)
Query: 4 PEGSQPENDTLSKSNDICQKKPNKVPAEGTDSLELTSYKNPKTWKKSISNFFRNQLRSTK 63
P G P + + S+D + KP+K E + + K KK +N ++TK
Sbjct: 328 PSGPNPSIKSKASSSDQ-KPKPSKPTEEEREEKAAAAVAAEKPKKKKATNEIDKIFQATK 386
Query: 64 SNEGDRPSGSKDNFEEKEITPDQKWQSLGKVFRRQSFAETWNKSPKSPGENSSHSKR 120
S+ R + EE K +S G ++ + A+ +K + ++ KR
Sbjct: 387 SSGKKRKQQQQQGEEESVRAKKPKERSEGA--KKSNKAKKGSKGRDTDDDDEVEEKR 441
>03_05_0788 +
27709563-27709832,27710101-27710887,27710947-27711086,
27712209-27712442,27712782-27712847
Length = 498
Score = 27.5 bits (58), Expect = 4.5
Identities = 13/53 (24%), Positives = 28/53 (52%)
Query: 83 TPDQKWQSLGKVFRRQSFAETWNKSPKSPGENSSHSKRLAVKKVISSYFGKSQ 135
+P K + K+F++ + + +PK G+ + LA K+++ + GKS+
Sbjct: 389 SPSFKTRQNQKLFQKSEYLRLVHDAPKYEGKLCKKACLLAYKEILKNEIGKSK 441
>01_06_1513 -
37884198-37884485,37884966-37886951,37886976-37887305,
37887397-37887471,37887543-37887734,37887922-37888173,
37888248-37888803,37888881-37889088,37889624-37889736,
37890029-37890060,37890545-37890619
Length = 1368
Score = 27.5 bits (58), Expect = 4.5
Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
Query: 6 GSQPEN-DTLSKSNDICQK-KPNKVPAEGTDSLELTSYKNPKTWKKSISNFFRNQLRSTK 63
G +N T S N CQ + N + + S E ++ K KKS F +Q R TK
Sbjct: 845 GKDKQNCGTCSLINCSCQSDRANSGSSASSSSSEASTLYGRKKNKKSSGRNFHSQSRETK 904
Query: 64 SNEGDRPS 71
N + S
Sbjct: 905 ENPSTQDS 912
>12_02_1281 +
27523411-27523561,27523725-27523810,27524653-27524718,
27524801-27524971,27525365-27525535,27525620-27525739,
27525868-27526014,27526193-27526264,27526359-27526832,
27526914-27527086,27527194-27527230
Length = 555
Score = 27.1 bits (57), Expect = 5.9
Identities = 19/70 (27%), Positives = 29/70 (41%)
Query: 12 DTLSKSNDICQKKPNKVPAEGTDSLELTSYKNPKTWKKSISNFFRNQLRSTKSNEGDRPS 71
D+LSK+N K+P+ + T + K KS R+ R G +
Sbjct: 363 DSLSKTNGFLSKRPSFQMRSSVSTTTTTLVNHAKGASKSFDGGCRSLDRYKGHVNGSGMN 422
Query: 72 GSKDNFEEKE 81
S D+ E+KE
Sbjct: 423 VSTDSSEDKE 432
>06_03_0551 -
22027441-22028224,22029015-22029344,22029510-22029778,
22030530-22031453,22037761-22038360,22040049-22040267
Length = 1041
Score = 27.1 bits (57), Expect = 5.9
Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 6/85 (7%)
Query: 53 NFFRNQLRSTKSNEGDRPSGSKDNFEEKEITPD------QKWQSLGKVFRRQSFAETWNK 106
N+F+ + N SG ++ EEK + Q +Q+ G F+ QS N
Sbjct: 357 NYFQGEASQNDGNSIKEQSGYGNSCEEKTFQSNRNYFQGQAFQNDGNSFKEQSVQNNGNS 416
Query: 107 SPKSPGENSSHSKRLAVKKVISSYF 131
+ EN+ +S + + + YF
Sbjct: 417 IEEQICENNGNSCEVQIFQNNKDYF 441
>01_06_1658 -
38954953-38955145,38955310-38955368,38955541-38955587,
38956264-38956294,38956507-38956569,38956760-38956855,
38956939-38957022,38957112-38957204,38957505-38957582,
38957938-38958028,38958108-38958208,38958303-38959121,
38959216-38959266
Length = 601
Score = 27.1 bits (57), Expect = 5.9
Identities = 12/45 (26%), Positives = 20/45 (44%)
Query: 31 EGTDSLELTSYKNPKTWKKSISNFFRNQLRSTKSNEGDRPSGSKD 75
EG D L L++Y++ W+KS+ S + + G D
Sbjct: 169 EGYDKLRLSAYQSLSAWRKSVDGAVGGLTASVDATKKQAAGGVTD 213
>09_06_0048 + 20477076-20478547,20478643-20478722,20478880-20478893,
20480164-20481199,20481275-20481402,20481673-20481732,
20481774-20481878,20481971-20482055,20482315-20482470,
20482562-20482831,20482877-20483671,20483844-20483903,
20484062-20485134
Length = 1777
Score = 26.6 bits (56), Expect = 7.9
Identities = 15/67 (22%), Positives = 31/67 (46%)
Query: 73 SKDNFEEKEITPDQKWQSLGKVFRRQSFAETWNKSPKSPGENSSHSKRLAVKKVISSYFG 132
S+ +F +K+ P + G+ ++ W + + GE+S+H + ++ S G
Sbjct: 1051 SRGSFSKKDNNPVSPGKGEGRSPAQRDLKTNWESNRNTWGESSTHIESPLGRRPAFSSHG 1110
Query: 133 KSQKVTS 139
+S TS
Sbjct: 1111 ESAGYTS 1117
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.304 0.122 0.351
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,656,842
Number of Sequences: 37544
Number of extensions: 187756
Number of successful extensions: 270
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 262
Number of HSP's gapped (non-prelim): 15
length of query: 144
length of database: 14,793,348
effective HSP length: 75
effective length of query: 69
effective length of database: 11,977,548
effective search space: 826450812
effective search space used: 826450812
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.9 bits)
S2: 56 (26.6 bits)
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