Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001099-TA|BGIBMGA001099-PA|undefined
(144 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g74690.1 68414.m08650 calmodulin-binding family protein low s... 34 0.032
At3g23030.1 68416.m02903 auxin-responsive protein / indoleacetic... 33 0.099
At4g37820.1 68417.m05351 expressed protein Kaposi's sarcoma-asso... 32 0.13
At5g52910.1 68418.m06566 timeless family protein contains Pfam d... 30 0.53
At3g26400.1 68416.m03292 eukaryotic translation initiation facto... 30 0.70
At1g56660.1 68414.m06516 expressed protein 30 0.70
At4g14560.1 68417.m02242 auxin-responsive protein / indoleacetic... 29 0.92
At1g51540.1 68414.m05801 kelch repeat-containing protein contain... 29 1.2
At4g11050.1 68417.m01796 endo-1,4-beta-glucanase, putative / cel... 29 1.6
At3g54150.1 68416.m05986 embryo-abundant protein-related similar... 29 1.6
At1g79280.1 68414.m09242 expressed protein weak similarity to Nu... 29 1.6
At1g67580.1 68414.m07699 protein kinase family protein contains ... 29 1.6
At1g16360.1 68414.m01957 LEM3 (ligand-effect modulator 3) family... 29 1.6
At2g22795.1 68415.m02704 expressed protein 28 2.1
At5g53020.1 68418.m06585 expressed protein 28 2.8
At4g20850.1 68417.m03025 subtilase family protein contains simil... 28 2.8
At3g28770.1 68416.m03591 expressed protein 28 2.8
At2g45403.1 68415.m05647 hypothetical protein 28 2.8
At1g30320.1 68414.m03708 remorin family protein contains Pfam do... 28 2.8
At5g43700.1 68418.m05342 auxin-responsive protein / indoleacetic... 27 3.7
At5g17930.1 68418.m02102 MA3 domain-containing protein low simil... 27 3.7
At5g16680.1 68418.m01951 PHD finger family protein contains Pfam... 27 3.7
At3g57980.1 68416.m06462 DNA-binding bromodomain-containing prot... 27 3.7
At5g24590.2 68418.m02905 turnip crinkle virus-interacting protei... 27 4.9
At4g13750.1 68417.m02134 expressed protein 27 4.9
At4g00170.1 68417.m00018 vesicle-associated membrane family prot... 27 4.9
At3g61260.1 68416.m06856 DNA-binding family protein / remorin fa... 27 4.9
At3g49400.1 68416.m05400 transducin family protein / WD-40 repea... 27 4.9
At5g58590.1 68418.m07342 Ran-binding protein 1, putative / RanBP... 26 8.6
At5g16500.1 68418.m01928 protein kinase family protein contains ... 26 8.6
At5g13460.1 68418.m01549 calmodulin-binding family protein low s... 26 8.6
At4g13500.1 68417.m02106 expressed protein 26 8.6
At3g18370.1 68416.m02336 C2 domain-containing protein contains P... 26 8.6
>At1g74690.1 68414.m08650 calmodulin-binding family protein low
similarity to SF16 protein [Helianthus annuus]
GI:560150; contains Pfam profile PF00612: IQ
calmodulin-binding motif
Length = 587
Score = 34.3 bits (75), Expect = 0.032
Identities = 28/96 (29%), Positives = 48/96 (50%), Gaps = 7/96 (7%)
Query: 5 EGSQP-ENDTLSKSNDIC-QKKPNKV---PAEGTDSLELTSYK-NPKTWKKSISNFFRNQ 58
E S P ++T + ++C +KK ++ P E +LE+ + P +++ + NQ
Sbjct: 373 ESSYPLVHETAEEPVNVCDEKKKQEISEQPEEEVHALEMEVHTPGPLETNEALDSSLVNQ 432
Query: 59 LRST-KSNEGDRPSGSKDNFEEKEITPDQKWQSLGK 93
+ S K+ ++PS KD EEK P+ K S GK
Sbjct: 433 IDSNEKAMVEEKPSMEKDTKEEKTPKPNNKENSAGK 468
>At3g23030.1 68416.m02903 auxin-responsive protein / indoleacetic
acid-induced protein 2 (IAA2) identical to SP|P49678
Auxin-responsive protein IAA2 (Indoleacetic acid-induced
protein 2) {Arabidopsis thaliana}
Length = 174
Score = 32.7 bits (71), Expect = 0.099
Identities = 22/89 (24%), Positives = 37/89 (41%), Gaps = 4/89 (4%)
Query: 6 GSQPENDTLSKSNDICQKKPNKVPAEGTDSLELTSYKNPKTWKKSISNFFRNQLRSTKSN 65
G P + +N + K + A ++L +YKN K++ N F+ +
Sbjct: 63 GWPPVRSSRKNNNSVSYVKVSMDGAPYLRKIDLKTYKNYPELLKALENMFKVMIGEYCER 122
Query: 66 EGDRPSGSKDNFEEKEITPDQKWQSLGKV 94
EG + SG +E+K D W +G V
Sbjct: 123 EGYKGSGFVPTYEDK----DGDWMLVGDV 147
>At4g37820.1 68417.m05351 expressed protein Kaposi's
sarcoma-associated herpes-like virus ORF73gene, Kaposi's
sarcoma-associated herpesvirus, U52064
Length = 532
Score = 32.3 bits (70), Expect = 0.13
Identities = 29/132 (21%), Positives = 58/132 (43%), Gaps = 3/132 (2%)
Query: 5 EGSQPENDTLSKSNDICQKKPNKVPAEGTDSLELTSYKNPKTWKKSISNFFRNQLRSTKS 64
E + E D S ++ ++KP + E + S + P+ +K S+
Sbjct: 314 ESGKNEKDASSSQDESKEEKPERKKKEESSSQGEGKEEEPEKREKEDSSSQEESKEEEPE 373
Query: 65 NEGDRPSGSKDNFEEKEITPDQKWQSLGKVFRRQSFAETWNKSPKSPGENSSHSKRLAVK 124
N+ S S++ E KE +K +S + ET KS +S + +++S++ ++
Sbjct: 374 NKEKEASSSQEENEIKETEIKEKEESSSQEGNENK--ETEKKSSESQRKENTNSEK-KIE 430
Query: 125 KVISSYFGKSQK 136
+V S+ +QK
Sbjct: 431 QVESTDSSNTQK 442
>At5g52910.1 68418.m06566 timeless family protein contains Pfam
domains PF05029: Timeless protein C terminal region and
PF04821: Timeless protein
Length = 1141
Score = 30.3 bits (65), Expect = 0.53
Identities = 15/57 (26%), Positives = 26/57 (45%)
Query: 2 LCPEGSQPENDTLSKSNDICQKKPNKVPAEGTDSLELTSYKNPKTWKKSISNFFRNQ 58
L P+G +K + + ++ GTD L+ TS P +K +S+F + Q
Sbjct: 879 LVPDGGISAAQVTNKLKQLGLETRKRLRRGGTDHLDATSLAQPSNTRKRVSSFSKEQ 935
>At3g26400.1 68416.m03292 eukaryotic translation initiation factor
4B, putative/ eIF-4B, putative similar to eukaryotic
initiation factor 4B [Arabidopsis thaliana] GI:6739518
Length = 532
Score = 29.9 bits (64), Expect = 0.70
Identities = 24/115 (20%), Positives = 46/115 (40%), Gaps = 14/115 (12%)
Query: 4 PEGSQPENDTLSKSNDICQKKPNKVPAEGTDSLELTSYKNPKTWKKSISNFFRNQLRSTK 63
P +Q S N++ + +P P E+ + K W+K ++
Sbjct: 326 PSSAQSNRSESSGLNNVVKPRPKVNPFGDAKPREVLLEEQGKDWRKMDLELEHRRV---- 381
Query: 64 SNEGDRPSGSKDNFEEKEITPDQKWQSLGKVFRRQSFAETWNKSPKSPGENSSHS 118
DRP ++ ++EI + L K ++S A +S + PG N++H+
Sbjct: 382 ----DRPETEEEKMLKEEI------EELRKKLEKESVAPEIKESDQEPGSNNNHN 426
>At1g56660.1 68414.m06516 expressed protein
Length = 522
Score = 29.9 bits (64), Expect = 0.70
Identities = 18/84 (21%), Positives = 35/84 (41%)
Query: 4 PEGSQPENDTLSKSNDICQKKPNKVPAEGTDSLELTSYKNPKTWKKSISNFFRNQLRSTK 63
PE + D K D+ Q+K +G + + ++ KK + Q +K
Sbjct: 146 PEEKNKKADKEKKHEDVSQEKEELEEEDGKKNKKKEKDESGTEEKKKKPKKEKKQKEESK 205
Query: 64 SNEGDRPSGSKDNFEEKEITPDQK 87
SNE + G K+ E+ ++ + +
Sbjct: 206 SNEDKKVKGKKEKGEKGDLEKEDE 229
Score = 29.1 bits (62), Expect = 1.2
Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 4/82 (4%)
Query: 63 KSNEGDRPSGSKDNFEEKEITPDQKWQSLGKVFRRQSFAETWNKSPKSPGENSSHSKRLA 122
K+ + D+ +D +EKE ++ + K + +S E K PK + SK
Sbjct: 149 KNKKADKEKKHEDVSQEKEELEEEDGKKNKKKEKDESGTEEKKKKPKKEKKQKEESKSNE 208
Query: 123 VKKVISSYFGKSQKVTSADGEK 144
KKV GK +K D EK
Sbjct: 209 DKKV----KGKKEKGEKGDLEK 226
>At4g14560.1 68417.m02242 auxin-responsive protein / indoleacetic
acid-induced protein 1 (IAA1) identical to SP|P49677
Auxin-responsive protein IAA1 (Indoleacetic acid-induced
protein 1) {Arabidopsis thaliana}
Length = 168
Score = 29.5 bits (63), Expect = 0.92
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Query: 36 LELTSYKNPKTWKKSISNFFRNQLRSTKSNEGDRPSGSKDNFEEKEITPDQKWQSLGKV 94
++L YKN K++ N F+ + EG + SG +E+K D W +G V
Sbjct: 90 IDLKMYKNYPELLKALENMFKFTVGEYSEREGYKGSGFVPTYEDK----DGDWMLVGDV 144
>At1g51540.1 68414.m05801 kelch repeat-containing protein contains
Pfam profile PF01344: Kelch motif
Length = 1036
Score = 29.1 bits (62), Expect = 1.2
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 47 WKKSISNFFRNQLRSTKSNEGDRPSGSKD-NFEEKEITP-DQKWQSLGKVFRRQ 98
W KSIS FF + ST++ + D N E+ E+ P Q Q+ G+ F ++
Sbjct: 358 WLKSISKFFLDSSESTETFDASNTIDHYDNNDEDDELLPLGQVLQNFGESFLKK 411
>At4g11050.1 68417.m01796 endo-1,4-beta-glucanase, putative /
cellulase, putative similar to endo-beta-1,4-glucanase
GI:4972236 from [Fragaria x ananassa]
Length = 626
Score = 28.7 bits (61), Expect = 1.6
Identities = 16/55 (29%), Positives = 24/55 (43%)
Query: 2 LCPEGSQPENDTLSKSNDICQKKPNKVPAEGTDSLELTSYKNPKTWKKSISNFFR 56
L P S + + K + Q+KP K PA + S S K +WK ++R
Sbjct: 499 LLPGVSPTPSPVIIKPAPVPQRKPTKPPAASSPSPITISQKMTNSWKNEGKVYYR 553
>At3g54150.1 68416.m05986 embryo-abundant protein-related similar to
embryo-abundant protein [Picea glauca] GI:1350531
Length = 323
Score = 28.7 bits (61), Expect = 1.6
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Query: 27 KVPAEGTDSLELTSYKNPKTWKKSISNFFRNQLRSTKSNEGDRPSGSKDNFEEKEITPDQ 86
K+P E +S ++ S K + + RNQ R S+EGDR S K N E + D+
Sbjct: 257 KIPEEKFESDQVLSNKGRLLLETEVG---RNQKRPQPSDEGDRQS-KKQNTSEDDACKDK 312
>At1g79280.1 68414.m09242 expressed protein weak similarity to
Nucleoprotein TPR (Swiss-Prot:P12270) [Homo sapiens]
Length = 2111
Score = 28.7 bits (61), Expect = 1.6
Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 3/90 (3%)
Query: 7 SQPENDTLSKSNDICQKKPNKVPAEGTDSLELTSYKNPKTWKKS---ISNFFRNQLRSTK 63
S+ END + KS + K A + S E+ S + KKS N + L++
Sbjct: 1035 SELENDCIQKSEQLATAAAGKEDALLSASAEIASLREENLVKKSQIEAMNIQMSTLKNDL 1094
Query: 64 SNEGDRPSGSKDNFEEKEITPDQKWQSLGK 93
E ++ ++ N+E + I + Q L K
Sbjct: 1095 ETEHEKWRVAQRNYERQVILLSETIQELTK 1124
>At1g67580.1 68414.m07699 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 752
Score = 28.7 bits (61), Expect = 1.6
Identities = 24/104 (23%), Positives = 47/104 (45%), Gaps = 8/104 (7%)
Query: 6 GSQPENDTLSKSNDICQKKPNKVPAEGTDSLELTSYKNPKTWKKSISNFFRNQLRSTKSN 65
G+ D + ++ +KK K P TS + P+ + R RS+ S+
Sbjct: 275 GNSSPTDEVEIVEEVGEKKRRKKPFPVQGRFRNTS-QTPE-----VGELVREGYRSSDSD 328
Query: 66 EGDRPS--GSKDNFEEKEITPDQKWQSLGKVFRRQSFAETWNKS 107
E S GS+D+FEE++ K + + RR++ ++ +++
Sbjct: 329 ERGHHSLPGSRDDFEERDAVKSDKMEIDEEEHRRENSVDSLSET 372
>At1g16360.1 68414.m01957 LEM3 (ligand-effect modulator 3) family
protein / CDC50 family protein Similar to GI:4585976;
GI:11994416; GI:4835763; GI:9757735 from [Arabidopsis
thaliana]
Length = 336
Score = 28.7 bits (61), Expect = 1.6
Identities = 13/44 (29%), Positives = 20/44 (45%)
Query: 42 KNPKTWKKSISNFFRNQLRSTKSNEGDRPSGSKDNFEEKEITPD 85
KNP + N+++N R KS + + KD E K P+
Sbjct: 104 KNPVYVYYQLENYYQNHRRYVKSRQDGQLRSPKDEHETKSCAPE 147
>At2g22795.1 68415.m02704 expressed protein
Length = 734
Score = 28.3 bits (60), Expect = 2.1
Identities = 29/127 (22%), Positives = 46/127 (36%), Gaps = 2/127 (1%)
Query: 5 EGSQPENDTLSKSNDICQKKPNKVPAEGTDSLELTSY-KNP-KTWKKSISNFFRNQLRST 62
E E +T K Q++ E + +E +S KN K +K S+F
Sbjct: 446 ESKDRETETKEKEESSSQEETMDKETEAKEKVESSSQEKNEDKETEKIESSFLEETKEKE 505
Query: 63 KSNEGDRPSGSKDNFEEKEITPDQKWQSLGKVFRRQSFAETWNKSPKSPGENSSHSKRLA 122
+ S S++ EEKE +S + + E K S E S ++
Sbjct: 506 DETKEKEESSSQEKTEEKETETKDNEESSSQEETKDKENEKIEKEEASSQEESKENETET 565
Query: 123 VKKVISS 129
+K SS
Sbjct: 566 KEKEESS 572
Score = 26.6 bits (56), Expect = 6.5
Identities = 25/115 (21%), Positives = 47/115 (40%), Gaps = 9/115 (7%)
Query: 5 EGSQPENDTLSKSNDICQKKPNKVPAEGTDSLELTSYKNPKTWKKSISNFFRNQLRSTKS 64
E + E + + + +K+ K+ E + S E T K +T +K S+ N+ + +
Sbjct: 581 ENEKIEKEESAPQEETKEKENEKIEKEESASQEETKEKETETKEKEESS--SNESQENVN 638
Query: 65 NEGDRPSGSKDNFEEKEITPDQKWQSLGKVFRRQSFAETWNKSPKSPGENSSHSK 119
E ++ K+ EE E D+ K S ++T K + E +K
Sbjct: 639 TESEK----KEQVEENEKKTDEDTSESSK---ENSVSDTEQKQSEETSEKEESNK 686
>At5g53020.1 68418.m06585 expressed protein
Length = 721
Score = 27.9 bits (59), Expect = 2.8
Identities = 23/90 (25%), Positives = 40/90 (44%), Gaps = 6/90 (6%)
Query: 7 SQPENDTLSKSNDICQKKPNKVPAEGTDSLELTS--YKNPKTWKKSISNFFRNQLR--ST 62
+QP++ K+N C++K K A G E S +K ++ ++LR +
Sbjct: 415 TQPKSLVPHKNNMSCRRKNTKTEARGEQEREFDSRDVSQVNATEKGRESYSPDELRHLTL 474
Query: 63 KSNEGDRPSGSKDN--FEEKEITPDQKWQS 90
K+ + D GS++ E E T +K S
Sbjct: 475 KAAQSDAEEGSENERLLPENECTKREKANS 504
>At4g20850.1 68417.m03025 subtilase family protein contains similarity
to Tripeptidyl-peptidase II (EC 3.4.14.10) (TPP-II)
(Tripeptidyl aminopeptidase) (Swiss-Prot:P29144) [Homo
sapiens]
Length = 1380
Score = 27.9 bits (59), Expect = 2.8
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
Query: 47 WKKSISNFFRNQLRSTKSNEGDRPSGSKDNFEE--KEITPDQKW 88
++K ++ L+ K EG+ S KD FEE KE+T KW
Sbjct: 1261 YQKGLAMARIENLKGEKEGEGEEESSQKDKFEENFKELT---KW 1301
>At3g28770.1 68416.m03591 expressed protein
Length = 2081
Score = 27.9 bits (59), Expect = 2.8
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Query: 5 EGSQPEN-DTLSKSNDICQKKPNKVPAEGTDSLELTSYKNPKTW-KKSISNFFRNQLRST 62
EG++ EN DT++ S+ K K E +S ++ K + + N+ +T
Sbjct: 923 EGNKEENKDTINTSSKQKGKDKKKKKKESKNSNMKKKEEDKKEYVNNELKKQEDNKKETT 982
Query: 63 KSNEGDRPSGSKDNFEEKE 81
KS +KDN E+KE
Sbjct: 983 KSENSKLKEENKDNKEKKE 1001
Score = 26.6 bits (56), Expect = 6.5
Identities = 25/119 (21%), Positives = 52/119 (43%), Gaps = 4/119 (3%)
Query: 7 SQPENDTLSKSNDICQKKPN-KVPAEGTDSLELTSYKNPKTWKKSISNFFRNQLRSTKSN 65
S+ T + N + K+ N + + ++ +E K K KS+ +L ST++
Sbjct: 755 SKENKKTKTNENRVRNKEENVQGNKKESEKVEKGEKKESKD-AKSVETKDNKKLSSTENR 813
Query: 66 EGDRPSGSKDNFEEKEITPDQKWQSLGKVFRRQSFAETWNKSPKSPGENSSHSKRLAVK 124
+ + +DN E+KE + D +QS+ + ++ N K ++ + + VK
Sbjct: 814 DEAKERSGEDNKEDKEESKD--YQSVEAKEKNENGGVDTNVGNKEDSKDLKDDRSVEVK 870
Score = 26.6 bits (56), Expect = 6.5
Identities = 29/124 (23%), Positives = 47/124 (37%), Gaps = 11/124 (8%)
Query: 5 EGSQPENDTLSKSNDICQKKPNKVPAEGTDSLELTSYKNPKTWKKSISNFFRNQLRSTKS 64
E ++ EN L + N K NK E DS K KKS + + + + K
Sbjct: 980 ETTKSENSKLKEEN-----KDNKEKKESEDSASKNREKKEYEEKKSKT---KEEAKKEKK 1031
Query: 65 NEGDRPSGSKDNFE---EKEITPDQKWQSLGKVFRRQSFAETWNKSPKSPGENSSHSKRL 121
D+ KD+ E +KE + ++ K + E+ N K + H
Sbjct: 1032 KSQDKKREEKDSEERKSKKEKEESRDLKAKKKEEETKEKKESENHKSKKKEDKKEHEDNK 1091
Query: 122 AVKK 125
++KK
Sbjct: 1092 SMKK 1095
>At2g45403.1 68415.m05647 hypothetical protein
Length = 154
Score = 27.9 bits (59), Expect = 2.8
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 47 WKKSISNFFRNQLRSTKSNEGDR-PSGSKDNFEEKEITPDQKW 88
WK+S N F N L +T G++ S ++ +K +KW
Sbjct: 33 WKESFENLFNNVLMTTTRKRGEKFASKGRNKRGDKSQKKAKKW 75
>At1g30320.1 68414.m03708 remorin family protein contains Pfam
domain, PF03763: Remorin, C-terminal region
Length = 509
Score = 27.9 bits (59), Expect = 2.8
Identities = 21/109 (19%), Positives = 47/109 (43%), Gaps = 6/109 (5%)
Query: 4 PEGSQPENDTLSKSNDICQKKPNKVPAEGTDSLELTSYKNPKTWKKSISNFFRNQLRSTK 63
P G QPE ++SK+ +++ ++ + E+ + + K +I+ + + K
Sbjct: 326 PRGGQPEESSMSKNT---RRELSEEEEKAKTRREIVAL-GVQLGKMNIAAWASKEEEENK 381
Query: 64 SNEGDRPSGSKDNFEEKEITPDQKWQSLGKV-FRRQSF-AETWNKSPKS 110
N GD K FE++ ++ +S ++R+ + W K+
Sbjct: 382 KNNGDAEEAQKIEFEKRATAWEEAEKSKHNARYKREEIRIQAWESQEKA 430
>At5g43700.1 68418.m05342 auxin-responsive protein / indoleacetic
acid-induced protein 4 (IAA4) / auxin-induced protein
(AUX2-11) identical to SP|P33077 Auxin-responsive
protein IAA4 (Indoleacetic acid-induced protein 4)
(Auxin-induced protein AUX2-11) {Arabidopsis thaliana}
Length = 186
Score = 27.5 bits (58), Expect = 3.7
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 4/59 (6%)
Query: 36 LELTSYKNPKTWKKSISNFFRNQLRSTKSNEGDRPSGSKDNFEEKEITPDQKWQSLGKV 94
++LT YK KS+ N F+ + EG + S +E+K D W +G V
Sbjct: 104 IDLTMYKQYPELMKSLENMFKFSVGEYFEREGYKGSDFVPTYEDK----DGDWMLVGDV 158
>At5g17930.1 68418.m02102 MA3 domain-containing protein low
similarity to SP|Q9P6R9 Cell cycle control protein cwf22
{Schizosaccharomyces pombe}; contains Pfam profile
PF02847: MA3 domain
Length = 707
Score = 27.5 bits (58), Expect = 3.7
Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 8/75 (10%)
Query: 71 SGSKDNFEEKEITPDQKWQSLGKVFRRQSFAE-----TWNKSPKSPGENSSHSKRLAVKK 125
+GS+ + +EK ++ Q G V + + F + T + SP N H K KK
Sbjct: 5 AGSQKSEKEKRVSSSASAQKSGDVIKSEDFRQISDSVTEHMESSSPSGNKDHGKSFIPKK 64
Query: 126 V---ISSYFGKSQKV 137
+ S K QKV
Sbjct: 65 EEVRVKSKEKKMQKV 79
>At5g16680.1 68418.m01951 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 1290
Score = 27.5 bits (58), Expect = 3.7
Identities = 21/60 (35%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
Query: 59 LRSTKSNEGDRPSGSKDNFEEKEITPDQKWQSLGKV--FRRQSFAETWNKSPKSPGENSS 116
L++ SN DR S K NF+EK K + V R KS KS NSS
Sbjct: 207 LQNPSSNHDDRVSSEKGNFKEKSRPGGNKERQEPSVEGSTRSGENRKDGKSSKSSSSNSS 266
>At3g57980.1 68416.m06462 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 632
Score = 27.5 bits (58), Expect = 3.7
Identities = 28/107 (26%), Positives = 45/107 (42%), Gaps = 6/107 (5%)
Query: 44 PKTWKKSISNFFRNQLRSTKSNEGDRPSGS---KDNFEEKE---ITPDQKWQSLGKVFRR 97
P T KK S + L + SN G P+GS K + ++K+ + K QS +R
Sbjct: 471 PSTAKKVGSRNVKTSLNAGISNRGRSPNGSSVLKKSVQQKKGINTSGGSKKQSAASFLKR 530
Query: 98 QSFAETWNKSPKSPGENSSHSKRLAVKKVISSYFGKSQKVTSADGEK 144
+ ++ SS+ KR A ++ +S K V G+K
Sbjct: 531 MKGVSSSETVVETVKAESSNGKRGAEQRKSNSKSEKVDAVKLPAGQK 577
>At5g24590.2 68418.m02905 turnip crinkle virus-interacting protein /
TCV-interacting protein (TIP) contains Pfam PF02365: No
apical meristem (NAM) domain; similar to NAC2
(GI:6456751) {Arabidopsis thaliana}; identical to cDNA
TIP mRNA, GI:9408600
Length = 451
Score = 27.1 bits (57), Expect = 4.9
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 85 DQKWQSLGKVFRRQSFAETWNKSPKSPGENSSHSKRLAVKKVISSYFGKSQKVT 138
D+K+ S G R + A W + K S +K + VK+ + Y G++ K T
Sbjct: 78 DRKYPS-GSRMNRATVAGYWKATGKDRKIKSGKTKIIGVKRTLVFYTGRAPKGT 130
>At4g13750.1 68417.m02134 expressed protein
Length = 2137
Score = 27.1 bits (57), Expect = 4.9
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 5 EGSQPENDTLSKSNDICQKKPNKVPAEGTDSLELTSYKN 43
+ S+ E DT S D+ + K+P E T++ ++ Y N
Sbjct: 1906 DDSKQELDTSSSKEDVTEALEEKIPIEMTNTNLVSGYDN 1944
>At4g00170.1 68417.m00018 vesicle-associated membrane family protein
/ VAMP family protein similar to VAP27 GI:6688926
[Nicotiana plumbaginifolia]
Length = 239
Score = 27.1 bits (57), Expect = 4.9
Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 4 PEGSQPENDTLSKSNDICQKKPNKVPAEGTDSLELTSYKNPKTWKKSISNFFRNQLRSTK 63
PEGS+ N ++ NDI + + + + + E TS K+ + W IS + +T+
Sbjct: 136 PEGSEEGNSPMASLNDIASQSASLFD-DVSRTFEETSEKSSEAW-SMISKLTEEKTSATQ 193
Query: 64 SNE 66
++
Sbjct: 194 QSQ 196
>At3g61260.1 68416.m06856 DNA-binding family protein / remorin
family protein similar to DNA-binding protein gi|601843
[Arabidopsis thaliana], remorin [Solanum tuberosum]
GI:1881585; contains Pfam profiles PF03763: Remorin
C-terminal region, PF03766: Remorin N-terminal region
Length = 212
Score = 27.1 bits (57), Expect = 4.9
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 85 DQKWQSLGKVFRRQSFAETWNKSPKSPGENSSHSK 119
D K L K +R SF W +S KS EN + K
Sbjct: 92 DVKLADLSKE-KRLSFVRAWEESEKSKAENKAEKK 125
>At3g49400.1 68416.m05400 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400); low
similarity (47%) to Agamous-like MADS box protein AGL5
(SP:P29385) {Arabidopsis thaliana}
Length = 892
Score = 27.1 bits (57), Expect = 4.9
Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
Query: 51 ISNFFRNQLRSTKSNEGDRPSGS--KDNFEEKEITPDQKWQSLGKVFRRQSFAETWNKSP 108
IS L S E PS S KD E + D++ SL RR++ A N
Sbjct: 134 ISKMLYENLSSMNFGESKNPSTSLSKDQVVEHDHEEDERISSLKARKRRKTSANNINLHE 193
Query: 109 KSPGENSSHSKR 120
K+ + +S SK+
Sbjct: 194 KNYTDRASCSKQ 205
>At5g58590.1 68418.m07342 Ran-binding protein 1, putative / RanBP1,
putative strong similarity to Ran binding proteins from
Arabidopsis thaliana atranbp1a [Arabidopsis thaliana]
GI:2058282, atranbp1b [Arabidopsis thaliana] GI:2058284;
contains Pfam profile PF00638: RanBP1 domain
Length = 219
Score = 26.2 bits (55), Expect = 8.6
Identities = 12/52 (23%), Positives = 25/52 (48%)
Query: 36 LELTSYKNPKTWKKSISNFFRNQLRSTKSNEGDRPSGSKDNFEEKEITPDQK 87
+ S +N KT+ + + +Q +S +GD +G +N +E ++K
Sbjct: 137 IRFASIENCKTFMEKFTEIAESQQVGKESTQGDEAAGLIENLSVEENISEEK 188
>At5g16500.1 68418.m01928 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 636
Score = 26.2 bits (55), Expect = 8.6
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Query: 60 RSTKSNEGDRPSGSKDNFEEKEITPDQKWQSLGKVFRRQSFAETWNKSPKSPGENS 115
R N+ S S+D EEKE +++ +S K +RQ ET S NS
Sbjct: 393 RKDVGNKSSSSSDSEDEEEEKEQKAEKEEESTSK--KRQEQEETATDSDDESDSNS 446
>At5g13460.1 68418.m01549 calmodulin-binding family protein low
similarity to SF16 protein [Helianthus annuus]
GI:560150; contains Pfam profile PF00612: IQ
calmodulin-binding motif
Length = 443
Score = 26.2 bits (55), Expect = 8.6
Identities = 21/90 (23%), Positives = 40/90 (44%)
Query: 52 SNFFRNQLRSTKSNEGDRPSGSKDNFEEKEITPDQKWQSLGKVFRRQSFAETWNKSPKSP 111
SN F + + +N R S EEKE K ++ + R + +A T KS +S
Sbjct: 187 SNIFNDNILKVDTNGQKRWDDSLLTKEEKEAVVMSKKEASLRRERIKEYAVTHRKSAESY 246
Query: 112 GENSSHSKRLAVKKVISSYFGKSQKVTSAD 141
+ S+ + + + + + KS+++ D
Sbjct: 247 QKRSNTKWKYWLDEWVDTQLTKSKELEDLD 276
>At4g13500.1 68417.m02106 expressed protein
Length = 125
Score = 26.2 bits (55), Expect = 8.6
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 66 EGDRPSGSKDNFEEKEITPDQKWQSLGK 93
+G+ K F KE P+Q WQS+G+
Sbjct: 58 DGEVKPKDKKKFITKEEEPEQYWQSVGE 85
>At3g18370.1 68416.m02336 C2 domain-containing protein contains Pfam
profile: PF00168 C2 domain
Length = 815
Score = 26.2 bits (55), Expect = 8.6
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Query: 10 ENDTLSKSNDIC-QKKPNKVPAEGTDSLELTSYKNPKTWKKSISNFFRNQLRSTKSNEGD 68
+N ++K + C Q+ VP EG S ELT K W S + N + S+ + D
Sbjct: 411 DNGVIAKHAEFCGQEIEMVVPFEGVSSGELTVRLLLKEWHFSDGSHSLNSVNSSSLHSLD 470
Query: 69 RPS 71
S
Sbjct: 471 SSS 473
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.304 0.122 0.351
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,022,076
Number of Sequences: 28952
Number of extensions: 174394
Number of successful extensions: 362
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 343
Number of HSP's gapped (non-prelim): 38
length of query: 144
length of database: 12,070,560
effective HSP length: 75
effective length of query: 69
effective length of database: 9,899,160
effective search space: 683042040
effective search space used: 683042040
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.9 bits)
S2: 55 (26.2 bits)
- SilkBase 1999-2023 -