Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001098-TA|BGIBMGA001098-PA|IPR000917|Sulfatase
         (455 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g03130.1 68416.m00309 expressed protein ; expression supporte...    31   1.6  
At1g08620.1 68414.m00955 transcription factor jumonji (jmj) fami...    29   4.8  
At2g07741.1 68415.m00991 ATPase subunit 6, putative similar to A...    29   8.5  

>At3g03130.1 68416.m00309 expressed protein ; expression supported
           by MPSS
          Length = 520

 Score = 31.1 bits (67), Expect = 1.6
 Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 1/65 (1%)

Query: 152 SARQKFAAVLSKLDESVGKVVKALHTRGLLENSIVVFSTDNGGPAAGFNDN-AASNYPLK 210
           S R+  AA  SK DESV +V     +  LLE S+   S     P     D+ A S +  K
Sbjct: 144 STRRAQAAASSKKDESVQRVYSTRRSVRLLEESMADLSLKTNVPVKKHEDSPAGSKFQAK 203

Query: 211 GVKNT 215
             +N+
Sbjct: 204 SDENS 208


>At1g08620.1 68414.m00955 transcription factor jumonji (jmj) family
           protein / zinc finger (C5HC2 type) family protein
           contains Pfam domains, PF02375: jmjN domain, PF02373:
           jmjC domain and PF02928: C5HC2 zinc finger
          Length = 1183

 Score = 29.5 bits (63), Expect = 4.8
 Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 6/63 (9%)

Query: 163 KLDESVGKVVKALHTRGLLENSIVVFSTDNGGPAAGFNDNAASNYPLKG--VKNTLWEGG 220
           +++    K  +AL  R  + +S      D+ G  A  NDNAAS  P +   VK  L +G 
Sbjct: 61  EVESDEAKAARALRRRPWINHS----GCDDDGDCAANNDNAASQNPDQNCDVKPALPKGV 116

Query: 221 VRG 223
           VRG
Sbjct: 117 VRG 119


>At2g07741.1 68415.m00991 ATPase subunit 6, putative similar to
           ATPase subunit 6 GI:515963 from [Raphanus sativus];
           contains Pfam profile: PF00119 ATP synthase, A subunit
          Length = 385

 Score = 28.7 bits (61), Expect = 8.5
 Identities = 16/36 (44%), Positives = 20/36 (55%)

Query: 331 ASLLYDSHAGRILDKLNLMPPKEKVMELRDEATVKC 366
           AS   D+HAG   D   L P  E+V+EL+ E   KC
Sbjct: 42  ASGTQDTHAGIFEDCPGLNPNDERVVELQCEIREKC 77


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.317    0.136    0.425 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,460,950
Number of Sequences: 28952
Number of extensions: 503054
Number of successful extensions: 1015
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1013
Number of HSP's gapped (non-prelim): 3
length of query: 455
length of database: 12,070,560
effective HSP length: 83
effective length of query: 372
effective length of database: 9,667,544
effective search space: 3596326368
effective search space used: 3596326368
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 61 (28.7 bits)