GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001098-TA|BGIBMGA001098-PA|IPR000917|Sulfatase
         (455 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr 2|...    46   8e-06
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc...    29   1.0  
SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa...    29   1.3  
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar...    27   7.2  

>SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 554

 Score = 46.4 bits (105), Expect = 8e-06
 Identities = 35/141 (24%), Positives = 67/141 (47%), Gaps = 15/141 (10%)

Query: 16  LNEKI--LPQYLKDLGYKTHLVGKWHLGSYKKEYLPLNRGFDSHVGFWTGRIDMYDHTTM 73
           LN+++  LP+ L++ GY T + GKWHLG     Y P  RGF        G  + + +   
Sbjct: 100 LNDRVAALPEILQEAGYYTTMSGKWHLGLTPDRY-PSKRGFKESFALLPGGGNHFAYEPG 158

Query: 74  EQGSWGTDFRRG-FEVAHD------LFGVYATDVYTDEAIKVVNSHNKSEPLFLMLAHSA 126
            + +    F    +   HD      L   Y+++ + ++ I  + +  KS+  F  L  +A
Sbjct: 159 TRENPAVPFLPPLYTHNHDPVDHKSLKNFYSSNYFAEKLIDQLKNREKSQSFFAYLPFTA 218

Query: 127 VHSGNPYEPIRAPQKLIDAFK 147
                P+ P+++P++ I+ ++
Sbjct: 219 -----PHWPLQSPKEYINKYR 234



 Score = 38.7 bits (86), Expect = 0.002
 Identities = 16/37 (43%), Positives = 27/37 (72%)

Query: 157 FAAVLSKLDESVGKVVKALHTRGLLENSIVVFSTDNG 193
           +AA++  LD ++G+V+  L T G L+N+ V+F +DNG
Sbjct: 293 YAAMVELLDLNIGRVIDYLKTIGELDNTFVIFMSDNG 329


>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1679

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 8/82 (9%)

Query: 225  GFLWSPLLDSKARVA-YQKMHISDWLPTLYSAAGGDLSVLENLDGVNQWDALSKNTESPR 283
            G +W  L+ S   +A ++K  + D L  +     G  S  +    VN   +L  N   P 
Sbjct: 1048 GEIWDTLVPSDLNLASHRKYLVEDCLEFM-----GSRSWRDRESSVNTLVSLLSNV--PV 1100

Query: 284  TSVLHNIDDIWGIAALTVDKYK 305
            T  L+ ++DIW ++  T+D  K
Sbjct: 1101 TEYLNQLEDIWNMSFRTLDDIK 1122


>SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 528

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 13/32 (40%), Positives = 17/32 (53%)

Query: 260 LSVLENLDGVNQWDALSKNTESPRTSVLHNID 291
           ++  + L G NQ DAL KN E      L N+D
Sbjct: 112 IAYCQKLSGTNQADALWKNVEKDLKETLDNVD 143


>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
           Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 12/35 (34%), Positives = 16/35 (45%)

Query: 193 GGPAAGFNDNAASNYPLKGVKNTLWEGGVRGAGFL 227
           GG   GFND A+  Y  +G     +E    GA  +
Sbjct: 36  GGGRGGFNDGASYGYDQRGQGRNFYESDGPGANLV 70


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.136    0.425 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,225,058
Number of Sequences: 5004
Number of extensions: 97553
Number of successful extensions: 178
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 172
Number of HSP's gapped (non-prelim): 7
length of query: 455
length of database: 2,362,478
effective HSP length: 75
effective length of query: 380
effective length of database: 1,987,178
effective search space: 755127640
effective search space used: 755127640
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 55 (26.2 bits)