GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001098-TA|BGIBMGA001098-PA|IPR000917|Sulfatase
         (455 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0185 - 1570942-1571178,1571525-1571656,1571737-1571816,157...    33   0.47 
03_03_0246 + 15789635-15794227,15794314-15794555,15794630-157947...    33   0.62 
05_07_0076 - 27520152-27520379,27520785-27521096,27521194-275213...    30   4.4  
02_02_0307 - 8809724-8811589,8811681-8811762,8812130-8812242,881...    29   5.8  

>01_01_0185 -
           1570942-1571178,1571525-1571656,1571737-1571816,
           1571919-1572048,1572136-1572268,1572376-1572497,
           1572612-1572749,1572898-1572918,1573493-1573678,
           1574576-1574713,1575068-1575532
          Length = 593

 Score = 33.1 bits (72), Expect = 0.47
 Identities = 26/73 (35%), Positives = 33/73 (45%), Gaps = 5/73 (6%)

Query: 237 RVAYQKMHISDWLPTLYSAAGGDLSVLENLDG-VNQWDALSKNTESPRTSVLHNID---- 291
           +V Y K H       L SAA  DL  L N  G VN ++A+ +N E    ++L   D    
Sbjct: 29  KVTYPKRHRKQGAAALPSAAAPDLGFLPNGGGKVNVFEAVDRNAEKRHRALLAARDAADP 88

Query: 292 DIWGIAALTVDKY 304
           D   IAA T   Y
Sbjct: 89  DAARIAAATASAY 101


>03_03_0246 +
           15789635-15794227,15794314-15794555,15794630-15794771,
           15796089-15796272,15796349-15796696,15796753-15797450,
           15798208-15798900
          Length = 2299

 Score = 32.7 bits (71), Expect = 0.62
 Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 1/62 (1%)

Query: 234 SKARVAYQKMHISDWLPTLYSAAGGDLSVLENLD-GVNQWDALSKNTESPRTSVLHNIDD 292
           S   V++ +M +S   P L ++A GD +V+ ++D   +  DA + +  +  ++V H  DD
Sbjct: 894 SPPHVSHDEMDVSGDSPALPTSADGDRTVMSDIDHAASTLDAANTSRINTSSTVSHLEDD 953

Query: 293 IW 294
            W
Sbjct: 954 EW 955


>05_07_0076 -
           27520152-27520379,27520785-27521096,27521194-27521333,
           27521893-27521956,27522071-27522277,27522350-27522493,
           27522578-27522709,27522880-27524294,27524647-27524920,
           27526096-27526129,27527028-27527059
          Length = 993

 Score = 29.9 bits (64), Expect = 4.4
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 160 VLSKLDESVGKVVKAL-HTRGLLENSIVVFSTDNGG 194
           +LS LDES+GK+   L   RG L   IV  + D  G
Sbjct: 154 ILSSLDESIGKIDNFLSFERGFLHGDIVCSAADPSG 189


>02_02_0307 -
           8809724-8811589,8811681-8811762,8812130-8812242,
           8812361-8812492,8812681-8812864,8813002-8813135,
           8813552-8813656,8813738-8813839,8813930-8814022,
           8814136-8814456,8814595-8814696,8814791-8814853,
           8815213-8815708,8815964-8816124,8816213-8816743,
           8817077-8817118,8817203-8817334,8817639-8817703,
           8817858-8818169,8818262-8818334,8818425-8818517,
           8819440-8819501,8819740-8819809
          Length = 1777

 Score = 29.5 bits (63), Expect = 5.8
 Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 4/53 (7%)

Query: 137 RAPQKLID-AFKYIDDSARQKFAAVLSKLDESV--GK-VVKALHTRGLLENSI 185
           ++P +LI+ A KY DD+A  K  A    L+ S   G+ +   +HTRGL   S+
Sbjct: 679 KSPDELIEMAHKYYDDTALPKLVADFGSLELSPVDGRTLTDFMHTRGLQMRSL 731


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.317    0.136    0.425 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,355,164
Number of Sequences: 37544
Number of extensions: 636221
Number of successful extensions: 1090
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1090
Number of HSP's gapped (non-prelim): 4
length of query: 455
length of database: 14,793,348
effective HSP length: 84
effective length of query: 371
effective length of database: 11,639,652
effective search space: 4318310892
effective search space used: 4318310892
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 62 (29.1 bits)