Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001097-TA|BGIBMGA001097-
PA|IPR001580|Calreticulin/calnexin, IPR008985|Concanavalin A-like
lectin/glucanase
         (617 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X02007-1|CAA26038.1|   70|Apis mellifera prepromelittin protein.       26   0.79 
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    25   1.4  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   4.2  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       23   5.6  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   9.8  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    23   9.8  

>X02007-1|CAA26038.1|   70|Apis mellifera prepromelittin protein.
          Length = 70

 Score = 26.2 bits (55), Expect = 0.79
 Identities = 12/41 (29%), Positives = 24/41 (58%), Gaps = 2/41 (4%)

Query: 516 YAVVILGAFLVIGFVTYLLCGPKSEPEADPKKTDAFVEDDP 556
           + V +   F+V+ +++Y+   P+ EP  +P + +A  E DP
Sbjct: 3   FLVNVALVFMVV-YISYIYAAPEPEPAPEP-EAEADAEADP 41


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 25.4 bits (53), Expect = 1.4
 Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 99  RKILKNDFGLVLTTEAKHAAISTLLDKPFEFKNKPLI-VQYEVTMQEGQN 147
           +K +K D  L L T      +  L+DK F+ K+ P+I +  ++T++E  N
Sbjct: 20  QKKVKEDTELNLQTIFNEDKLDNLMDKQFKNKSLPVIEIWDQMTVKELAN 69


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.8 bits (49), Expect = 4.2
 Identities = 11/30 (36%), Positives = 19/30 (63%), Gaps = 1/30 (3%)

Query: 262 PPEEIDDPNDKKPEDWDEREKIVDPSATKP 291
           PP ++D+ +DK+    +E EK V+ +  KP
Sbjct: 689 PPPQVDEVDDKELSGAEE-EKEVEKALLKP 717


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 23.4 bits (48), Expect = 5.6
 Identities = 12/33 (36%), Positives = 15/33 (45%)

Query: 233 RPDNTFSILVDNKEVNAGSLLEDFTPPVNPPEE 265
           R   TF+   DN E  A    E + PP  P +E
Sbjct: 130 RRKKTFAAREDNDEEEAQKPKEQYIPPELPNDE 162


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.6 bits (46), Expect = 9.8
 Identities = 9/32 (28%), Positives = 19/32 (59%)

Query: 262 PPEEIDDPNDKKPEDWDEREKIVDPSATKPDD 293
           P EE DD +D + ++ + + +   P+++  DD
Sbjct: 81  PKEETDDKDDDESDNENIKSQKEFPNSSSSDD 112


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 22.6 bits (46), Expect = 9.8
 Identities = 10/32 (31%), Positives = 16/32 (50%)

Query: 282 KIVDPSATKPDDWDETEPAQIKDPNAIKPEGW 313
           KI D S T     DE++  +++   + K  GW
Sbjct: 422 KISDCSTTSSLSGDESDVVELQPVKSSKSSGW 453


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.315    0.135    0.424 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,491
Number of Sequences: 429
Number of extensions: 9999
Number of successful extensions: 28
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 22
Number of HSP's gapped (non-prelim): 9
length of query: 617
length of database: 140,377
effective HSP length: 62
effective length of query: 555
effective length of database: 113,779
effective search space: 63147345
effective search space used: 63147345
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 46 (22.6 bits)